Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859070.1:333173-333273 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_15636.ps.pdf
Locus Name: Cluster_15636
GGGGAUACAUUGUCAACGAGGCAUCUAAGUGGCUUUGAUGUGUAGUGUUAUUAUCGUAUCACAGCCAGCUUUGAUGAGCUUGGGGCAAUCUGUUAGUCAGC
...((((.((((((..((((.((((.((((((((.(((((((((((...)))).))))))).))))).))).))))..)))).)))))).))))....... (-30.40)
....................GCAUCUAAGUGGCUUUGAU.............................................................. len:19 al:11
....................GCAUCUAAGUGGCUUUGAUGUG........................................................... len:22 al:90
....................GCAUCUAAGUGGCUUUGA............................................................... len:18 al:1
....................uCAUCUAAGUGGCUUUGAUGUG........................................................... len:22 al:1
....................GCgUCUAAGUGGCUUUGAUGU............................................................ len:21 al:1
....................GCAcCUAAGUGGCUUUGAUGUG........................................................... len:22 al:1
....................GCAUCUAAGUGGCUUUGAUG............................................................. len:20 al:1
....................GCAUCUAAGUGGCUUUGuUGUG........................................................... len:22 al:1
....................GCAUgUAAGUGGCUUUGAUGUG........................................................... len:22 al:1
....................GCAUCUAAGUGGCcUUGAUGUG........................................................... len:22 al:1
....................GCAUCUAAGUGGCUUUGAUa............................................................. len:20 al:2
....................GCAUCUAAGUGGCUUUGAUGUa........................................................... len:22 al:7
....................GCAUCUAAGUGGCUgUGAUGUG........................................................... len:22 al:1
....................GuAUCUAAGUGGCUUUGAUGUG........................................................... len:22 al:1
.....................CAcCUAAGUGGCUUUGAUGUG........................................................... len:21 al:1
.....................CAUCUAAGUGGCUUUGgUGUG........................................................... len:21 al:1
.....................CAUCUAAGUGGCUUUGAUGUG........................................................... len:21 al:18
.....................CAUCUAAGUGGCUUUGAUGUa........................................................... len:21 al:6
.....................CAUCUAAGUGGCUUUGAUGc............................................................ len:20 al:1
......................AUCUAAGUGGCUUUGAUGUG........................................................... len:20 al:1
......................AUCUAAGUGGCUUUGAUGU............................................................ len:19 al:1
.......................UCUAAGUGGCUUUGAUGU............................................................ len:18 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:453
........................................................UAUCACAGCCAGCUUUGAUGAGuU..................... len:24 al:1
........................................................UuUCACAGCCAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUcUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCaAGCUUUGAUGAGCU..................... len:24 al:2
........................................................UAUCACAGCCAGCUUUGAcGAGCU..................... len:24 al:1
........................................................UAUCgCAGCCAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCUa.................... len:25 al:3
........................................................UAUCACAGCCAGCUUUGAUGAGu...................... len:23 al:60
........................................................UAUCACAGCCAGCUUUGAUGAGCaU.................... len:25 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGCUaG................... len:26 al:2
........................................................UAUCACAGCCAGCUUUGAUGAGCa..................... len:24 al:3
........................................................UAUCACAGCuAGCUUUGAUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGgUGAGCU..................... len:24 al:1
........................................................UAUCACAGCCAGCUUUGAUGAGC...................... len:23 al:294