Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026859070.1:332883-332981 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_15635.ps.pdf
Locus Name: Cluster_15635
AGAAAUUGGGAUAAGUGUUGGCGUCAAAGUGUCUGUGAAAUGUAAAUUAGGUCAUAUCACAGCCAGCUUUGAUGACAGCAAUAUUCUCAAAUCGUUCAU
.....((((((....(((((.(((((((((..((((((.(((..........))).))))))...))))))))).)))))....))))))......... (-32.60)
.GAAAUUGGGAUAAGUGUUG............................................................................... len:19 al:2
..AAAUUGGGAUAAGUGUUG............................................................................... len:18 al:2
....................GCGUCAAAGUGUCUGUGAAu........................................................... len:20 al:1
....................GCaUCAAAGUGUCUGUGAAAUG......................................................... len:22 al:1
....................uCGUCAAAGUGUCUGUGAAAUG......................................................... len:22 al:1
....................GCGUCAAAGcGUCUGUGAAAUG......................................................... len:22 al:2
....................GCGUCAAAGUGUCUGUGAAAUG......................................................... len:22 al:154
....................GCGUCAAAGUGUCUGUGuAAUG......................................................... len:22 al:1
....................aCGUCAAAGUGUCUGUGAAAU.......................................................... len:21 al:1
....................GCGUCAAAGUGUCUGUGAAA........................................................... len:20 al:4
....................GCGUCgAAGUGUCUGUGAAAUG......................................................... len:22 al:4
....................GCGUCAAAGUGUCUGUGAAAUu......................................................... len:22 al:2
....................GCGUCAAAGUGUCUGUGAAAUc......................................................... len:22 al:1
....................GCGUCAAAGUGUCUGUGAAAcG......................................................... len:22 al:1
....................GCGUCAAAGUGUCUGUGAAAUa......................................................... len:22 al:8
....................aCGUCAAAGUGUCUGUGAAAUG......................................................... len:22 al:1
....................GCGUCAAAGUGUCUGUGAAAUGa........................................................ len:23 al:10
....................GCGUCAAAGUGUCUGUGAAAU.......................................................... len:21 al:75
....................GCGUCAAAGUGUCUGUGAAAUGU........................................................ len:23 al:1
....................GCGUCAAAGUGUCUGUGAAAc.......................................................... len:21 al:4
....................GCGUCAAAGUGUCUGUGAA............................................................ len:19 al:2
....................GCGUCAcAGUGUCUGUGAA............................................................ len:19 al:1
....................GCGUCAAAGUGcCUGUGAAAUG......................................................... len:22 al:1
.....................................................cUAUCACAGCCAGCUUUGAUGACA...................... len:24 al:2
......................................................UAUCACAGuCAGCUUUGAUGACA...................... len:23 al:7
......................................................UAUCACAGCCAGCUUUGgUGACA...................... len:23 al:24
......................................................UAgCACAGCCAGCUUUGAUGACA...................... len:23 al:1
......................................................UAUCgCAGCCAGCUUUGAU.......................... len:19 al:1
......................................................cAUCACAGCCAGCUUUGAU.......................... len:19 al:2
......................................................UAUCACAGCCAGCUUUaAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAUGACAG..................... len:24 al:15
......................................................UAUCACgGCCAGCUUUGAUGACA...................... len:23 al:22
......................................................UAUCACAGCCAGCUUUGAUGuCA...................... len:23 al:4
......................................................UAUCACAGCCAGCUUUGAUuAC....................... len:22 al:1
......................................................UAUCACAGCCAGCUgUGAUGACA...................... len:23 al:1
......................................................cAUCACAGCCAGCUUUGAUGACAG..................... len:24 al:1
......................................................UAUCACAGCCAGCcUUGAUG......................... len:20 al:1
......................................................UAUCACAGCCAGCUUUGAUGACAGu.................... len:25 al:1
......................................................UAUCACAGCCAGCUUUGAUc......................... len:20 al:2
......................................................UAUCACAGCCAGCUUUGAUGu........................ len:21 al:1
......................................................UAcCACAGCCAGCUUUGAU.......................... len:19 al:2
......................................................UAUCACAGCaAGCUUUGAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUcUGAUG......................... len:20 al:2
......................................................UAUCACAuCCAGCUUUGAUGACA...................... len:23 al:1
......................................................UgUCACAGCCAGCUUUGAUGACA...................... len:23 al:12
......................................................UAUCACAGCCAGCUUUGAUGAa....................... len:22 al:13
......................................................UAUCACAGCCgGCUUUGAUGACAG..................... len:24 al:1
......................................................UAUCACAGCCAGCgUUGAUGACA...................... len:23 al:4
......................................................UAUCACAGCCAGCcUUGAU.......................... len:19 al:1
......................................................UAUCACAGCCAGCUUUGAUGAgA...................... len:23 al:351
......................................................UAUCACAGCCAGCUUUGAUGgCA...................... len:23 al:30
......................................................UAUCACAGCCAGCUUaGAUGACA...................... len:23 al:1
......................................................UAcCACAGCCAGCUUUGAUG......................... len:20 al:2
......................................................UAUCACuGCCAGCUUUGAUG......................... len:20 al:1
......................................................cAUCACAGCCAGCUUUGAUGAC....................... len:22 al:2
......................................................UAUCACgGCCAGCUUUGAUGAC....................... len:22 al:1
......................................................UAUCACAGCCuGCUUUGAUGACA...................... len:23 al:12
......................................................UAUCACAGCCAGCUUUGA........................... len:18 al:20
......................................................UcUCACAGCCAGCUUUGAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUG............................ len:17 al:4
......................................................UAUCACAGCCAGCUUUGAU.......................... len:19 al:93
......................................................UAUCACAGCCAGCUUUGcUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGaUUUGAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAaG......................... len:20 al:3
......................................................UAUCACgGCCAGCUUUGAUGA........................ len:21 al:2
......................................................UAUCACAGCCAGCUUgGAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAcGACA...................... len:23 al:9
......................................................UAUCcCAGCCAGCUUUGAUG......................... len:20 al:1
......................................................UAUCgCAGCCAGCUUUGAUGACA...................... len:23 al:24
......................................................UAUCACAGCCAGCUUUGAUGA........................ len:21 al:38
......................................................UAUCACAGCCAGCUUUGAUGAuA...................... len:23 al:7
......................................................UAUCACAGCCAGCUUU............................. len:16 al:2
......................................................UAUCACAGCCAGCUcUGAUGAC....................... len:22 al:1
......................................................UAcCACAGCCAGCUUUGAUGAC....................... len:22 al:3
......................................................UAUCACAGCCAGuUUUGAUGACA...................... len:23 al:9
......................................................UAUCACAGCCAGCUUUGuUGACA...................... len:23 al:5
......................................................UAUCACAGCCgGCUUUGAUGAC....................... len:22 al:3
......................................................UAUCACAGCgAGCUUUGAUGACA...................... len:23 al:5
......................................................UAUCACAGuCAGCUUUGAUG......................... len:20 al:1
......................................................UAUCACAGCCAGCUUcGAUG......................... len:20 al:1
......................................................UgUCACAGCCAGCUUUGAU.......................... len:19 al:1
......................................................UAUCACAGCCAGCcUUGAUGACA...................... len:23 al:11
......................................................UAUCACAaCCAGCUUUGAUGACA...................... len:23 al:5
......................................................UAUCACAGCCAGCUUUGAUGACg...................... len:23 al:65
......................................................UAUCACAGCCAGCUUUGAUGACAc..................... len:24 al:2
......................................................UAUCACAGCCAGCUUUGAUaACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAUGAC....................... len:22 al:536
......................................................UAUCACAGCCAGCUUUGAUGACAa..................... len:24 al:170
......................................................UAUgACAGCCAGCUUUGAUGACA...................... len:23 al:2
......................................................UAUCACAGCCAGCUUUGAc.......................... len:19 al:16
......................................................UAUCACAGCCAGCUUUGAUGAaA...................... len:23 al:11
......................................................UAUCACAGCCAGCUUUGAUGACc...................... len:23 al:5
......................................................UAUCACAGCCAGCUUUGAUGACAu..................... len:24 al:11
......................................................UAUCcCAGCCAGCUUUGAUGACA...................... len:23 al:3
......................................................UAUCACAGCCAGCUUUuAUG......................... len:20 al:1
......................................................UAUCACAGCCAGCUUUGAUGAu....................... len:22 al:32
......................................................UAUCACAGCCAGCUUUGAgG......................... len:20 al:1
......................................................UAUCACAGCCgGCUUUGAUGACA...................... len:23 al:19
......................................................UAUCACAGCCAGCUUUGAaGA........................ len:21 al:1
......................................................UAUCACAGCCAGCUUUGgUGAC....................... len:22 al:2
......................................................UAUCACAGCuAGCUUUGAU.......................... len:19 al:4
......................................................UAUCACAGCCAGCUUUGAUGACu...................... len:23 al:47
......................................................UAUCACAGCCAGCUcUGAUGACA...................... len:23 al:10
......................................................UAUuACAGCCAGCUUUGAUGACA...................... len:23 al:9
......................................................UAUCACAGCuAGCUUUGAUGA........................ len:21 al:1
......................................................UuUCACAGCCAGCUUUGAUGACA...................... len:23 al:4
......................................................UAUCACAGCCAGCUUUGgU.......................... len:19 al:2
......................................................UAUCACAGCCAGCUUUGAUG......................... len:20 al:382
......................................................aAUCACAGCCAGCUUUGAUGACA...................... len:23 al:2
......................................................UAUCACcGCCAGCUUUGAUGACA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAcGA........................ len:21 al:2
......................................................UAUCACAGCCAGCcUUGAUGAC....................... len:22 al:5
......................................................UAUCACAGCCAGCUUUGAUGACAGC.................... len:25 al:1
......................................................UAUCACAGCCAGuUUUGAUGAC....................... len:22 al:1
......................................................UAUCAaAGCCAGCUUUGAUGACA...................... len:23 al:1
......................................................cAUCACAGCCAGCUUUGAUG......................... len:20 al:1
......................................................UAUCACAGCCAGCUUcGAUGAC....................... len:22 al:2
......................................................UAUCACAGCCAGCUUUGAUGgC....................... len:22 al:5
......................................................UAcCACAGCCAGCUUUGAUGACA...................... len:23 al:19
......................................................UAUCACAGCCAGCUUUGAUGACAGaA................... len:26 al:1
......................................................UAUCACAGCCAGCUgUGAUGAC....................... len:22 al:1
......................................................UAUCACAGCCAGCUUUGAcG......................... len:20 al:6
......................................................UAUCACAGCCcGCUUUGAUGACA...................... len:23 al:1
......................................................UAUCACuGCCAGCUUUGAUGA........................ len:21 al:1
......................................................UAUCAuAGCCAGCUUUGAUGAC....................... len:22 al:1
......................................................UAUCACAGCCAGCUUUGAUGACAGa.................... len:25 al:16
......................................................cAUCACAGCCAGCUUUGAUGACA...................... len:23 al:22
......................................................UAUCACAGCCAGCUUUGAUGACA...................... len:23 al:4700
......................................................UcUCACAGCCAGCUUUGAUGAC....................... len:22 al:1
......................................................UAUCACAGCCAGCUUUGAUGcCA...................... len:23 al:1
......................................................UAUCACAGCCAGCUUUGAUa......................... len:20 al:42
......................................................UAUCACAGCuAGCUUUGAUG......................... len:20 al:5
......................................................UAUCACuGCCAGCUUUGAUGACA...................... len:23 al:4
......................................................UAUCACAGCCAGCUUUGAUu......................... len:20 al:3
......................................................UAUCACAGCCAaCUUUGAUGACA...................... len:23 al:3
......................................................UAUaACAGCCAGCUUUGAUGACA...................... len:23 al:2
......................................................UAUCACAGCCcGCUU.............................. len:15 al:1
......................................................UAUCAuAGCCAGCUUUGAUGACA...................... len:23 al:5
......................................................UgUCACAGCCAGCUUUGAUGAC....................... len:22 al:1
......................................................aAUCACAGCCAGCUUUGAUGAC....................... len:22 al:2
......................................................aAUCACAGCCAGCUUUGAUG......................... len:20 al:1
......................................................UAUCACAGCCAGCgUUGAUGAC....................... len:22 al:2
......................................................UAUCACAGCuAGCUUUGAUGACA...................... len:23 al:2
......................................................UAUCACAGCCAGCUUUGu........................... len:18 al:2
......................................................UAUCgCAGCCAGCUUUGAUGAC....................... len:22 al:1
......................................................UAUCACAGCCAGCUUcGAUGACA...................... len:23 al:12
......................................................UAUCACAGCCAGCUUUGAa.......................... len:19 al:31
.........................................................CACAGCCAGCUUUGAUGACA...................... len:20 al:3
..........................................................ACAGCCAGCUUUGAgGACA...................... len:19 al:1
..........................................................ACAGCCAGCUUUGAUGACA...................... len:19 al:21
..........................................................ACAGCCgGCUUUGAUGACA...................... len:19 al:2
..........................................................ACAGCCAGCUUUGAUGAC....................... len:18 al:1
..........................................................ACAGCCAGCUUUGAUGAgA...................... len:19 al:1
...........................................................CAGCCAGCUUUGAUGACA...................... len:18 al:2