Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026858897.1:43133-43248 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_15325.ps.pdf
Locus Name: Cluster_15325
CGGAACGCUGGGUUGGUUUACUUGUUCUACGAGCUGUAGCUGUCUUUGCCUAUAAUUUUUCAUAAAGCAUACGGCAGUUAUUACUCGUAGGAUACUUUAAUAUGCCCAAAUGUCAU
..((....(((((..(((....(((((((((((..(((((((((..(((.(((........)))..)))...)))))))))..)))))))))))....)))..)))))....)).. (-34.70)
.....................UUGUUCUACGAGCUGUAGC............................................................................ len:19 al:1
......................UGUUCUACGAGCUGUAGCU........................................................................... len:19 al:1
......................UGUUCUACGAGCUGUAGCUGUC........................................................................ len:22 al:406
......................UGUUCUACGAGCUGUAGCUGa......................................................................... len:21 al:16
......................UGUUCUACGAGuUGUAGCUGU......................................................................... len:21 al:2
......................UGUUCUACGAGCUGUAGCUGUCU....................................................................... len:23 al:25
......................UGUUCUACGAGCUGUAcCUGUCU....................................................................... len:23 al:1
......................UGUUCUACGAGCUGUAGCUGUCUUUGu................................................................... len:27 al:1
......................UGUUCUACGAGCUGUAGCUG.......................................................................... len:20 al:2
......................UGUUCUACGAGCUGUAGCUGUCUUUGCCUAU............................................................... len:31 al:1
......................UGUcCUACGAGCUGUAGCUGU......................................................................... len:21 al:1
......................UGUUCUACGAGCUGUAGuUGU......................................................................... len:21 al:1
......................UGUUCUACGAGCUGUAGCUGUCaUUGCCUA................................................................ len:30 al:1
......................UGUUCUACGAGCUGUAGCUGg......................................................................... len:21 al:7
......................UGUUCUACcAGCUGUAGCUGU......................................................................... len:21 al:1
......................UGUUCUACGAGCUGUAGCUGUCUUU..................................................................... len:25 al:3
......................UGUUCUACGAGCUGUAGCUGUa........................................................................ len:22 al:2
......................UGUUCUgCGAGCUGUAGCUGUCU....................................................................... len:23 al:1
......................UGUUCUACGAGCUGUAGCcGUC........................................................................ len:22 al:1
......................UGUUCUACGAGCUGUAcCUGU......................................................................... len:21 al:1
......................UGUUCUACGAGCUGcAGCUGUCU....................................................................... len:23 al:1
......................UGUUCUACGAGCUGUAGCUGc......................................................................... len:21 al:71
......................UGUUCUACGAGCUGUAGCUGU......................................................................... len:21 al:685
......................UaUUCUACGAGCUGUAGCUGU......................................................................... len:21 al:2
......................UGUUCUACGAGCUGgAGCUGUC........................................................................ len:22 al:3
......................UGUUCUACGAGCUGUAGCUGUCUUUGCCU................................................................. len:29 al:1
......................UGUUCcACGAGCUGUAGCUGUC........................................................................ len:22 al:1
......................UGUUCUACGAGCcGUAGCUGU......................................................................... len:21 al:1
......................UGUUCUACGAGCUGUAGCaGUC........................................................................ len:22 al:1
......................UGUUCUgCGAGCUGUAGCUGUC........................................................................ len:22 al:2
............................ACGAGCUGUAGCUGUCUUUGCa.................................................................. len:22 al:1
............................ACGAGCUGUAGCUGUCUUUGCC.................................................................. len:22 al:1
..............................................................UAAAGCAUACGGCAGUUAUUACUCGU............................ len:26 al:1
.................................................................AGCAUACGGCAGUUAUUACUCGU............................ len:23 al:1
.........................................................................GCAGUUAUUACUCGUAGGAUA...................... len:21 al:6
.........................................................................GCAGUUAUUACUCGUAGGAUAC..................... len:22 al:5
..........................................................................CAGUUAUUACUCGUAGGAUgCU.................... len:22 al:1
..........................................................................CAGUcAUUACUCGUAGGAUACU.................... len:22 al:1
..........................................................................CAGUUAUUACUCGUAGGAUACU.................... len:22 al:6
..........................................................................CAGUUAUUACUCGUAGGAUAC..................... len:21 al:1
...........................................................................AGUUAUUACUCGUAGGAUACU.................... len:21 al:1