Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026858165.1:13257-13355 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_13708.ps.pdf
Locus Name: Cluster_13708
AAAAAAACACAGUAUAAACGUGCCAUUUUUAUCAGUCACUGUGUGAUUAUAAUGUCGCAGGACUGAUAGGAAUGGAAUGCCAAACUGUUGACAGCAGCA
........(((((.....(((.(((((((((((((((.(((((............)))))))))))))))))))).)))....)))))........... (-32.50)
...................GUGCCAUUUUUAUCAGUCACUGUGUGAUU................................................... len:29 al:1
...................cUGCCAUUUUUAUCAGUCACUGUG........................................................ len:24 al:1
...................GUGCCAUUUUUAUCAGUCACUGUGUaA..................................................... len:27 al:2
...................cUGCCAUUUUUAUCAGUCACUGU......................................................... len:23 al:2
...................GUGCCAUUUUUAUCAGUCACUGc......................................................... len:23 al:2
...................GUGCCAUUUUUAUCAGUCACUGUa........................................................ len:24 al:1
...................GUGCCAUUUUUAUCAGUCACUGU......................................................... len:23 al:5
....................UGCCAUUUUUcUCAGUCACUGUG........................................................ len:23 al:6
....................UGCCAUcUUUAUCAGUCACUGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCAGUCACUGUGUGuU.................................................... len:27 al:1
....................UGCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:15150
....................cGCCAUUUUUAUCAGUCACUGUGU....................................................... len:24 al:6
....................UGCCAUUcUUAUCAGUCACUGUG........................................................ len:23 al:38
....................UGCCAUUUgUAUCAGUCACUGU......................................................... len:22 al:1
....................gGCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:6
....................UGCCAUUUUUgUCAGUCACUGU......................................................... len:22 al:58
....................UGCCAUUUUUAUCAGUCACU........................................................... len:20 al:4
....................UGCCAUUUUUcUCAGUCACUGU......................................................... len:22 al:21
....................UGCCAaUUUUAUCAGUCACUGUGU....................................................... len:24 al:2
....................UGCCAUcUUUAUCAGUCACUGUG........................................................ len:23 al:30
....................UGCCAUUUUUAUCgGUCACUGUGU....................................................... len:24 al:3
....................UGCCAUUcUUAUCAGUCACUGU......................................................... len:22 al:70
....................UGCCAUUUUcAUCAGUCACUGUG........................................................ len:23 al:21
....................UGCCgUUUUUAUCAGUCACUGUG........................................................ len:23 al:44
....................UGCCAUUUUUAUCAGUCACUGUGc....................................................... len:24 al:98
....................UGCCAUUUUUAUCAGUCACUGUGUGA..................................................... len:26 al:5
....................UGCCAUUUUUAUCAGUCACcGUG........................................................ len:23 al:45
....................cGCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:73
....................UGCCAUUUUUAUCAGUCACUGUGUGAUU................................................... len:28 al:2
....................cGCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:134
....................UGCCAUUUUUAUCAGUCuCUGUG........................................................ len:23 al:5
....................aGCCAUUUUUAUCAGUCACUGUGU....................................................... len:24 al:2
....................UGCCAUUUUUgUCAGUCACUGUG........................................................ len:23 al:36
....................UGCCAUUUUUAUCAaUCACUGUG........................................................ len:23 al:12
....................UGCCAcUUUUAUCAGUCACUGU......................................................... len:22 al:61
....................UGCCAUUUUUAUCAGUCACUcU......................................................... len:22 al:3
....................UGCCAUUUUUAUCAGUCgCUGUGU....................................................... len:24 al:3
....................UGCCAUUUUUAUCAGUCAaUGU......................................................... len:22 al:10
....................UGCCcUUUUUAUCAGUCACUGU......................................................... len:22 al:16
....................UGCCAUUUUUcUCAGUCACUGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCAGUCcCUGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCAGUCACUGaGU....................................................... len:24 al:2
....................UGCCAUUUUUAUCAGUCACUuU......................................................... len:22 al:2
....................UGCCAUUUUUAUCAGUCACUGcG........................................................ len:23 al:54
....................UGCCAUUUUUAUCAaUCACUGU......................................................... len:22 al:14
....................UGCCAUUUUUAaCAGUCACUGU......................................................... len:22 al:3
....................UGCCAUUUUUAUCAGUCAuUGU......................................................... len:22 al:47
....................UGCCAcUUUUAUCAGUCACUGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCcGUCACUGU......................................................... len:22 al:16
....................UGCCAUUUUUAUCAGUCACUGUaU....................................................... len:24 al:32
....................UGCCAUUUUUAUCAGaCACUGU......................................................... len:22 al:12
....................UGCCAUUUUUAUCAGUCACUaUG........................................................ len:23 al:11
....................UGCCgUUUUUAUCAGUCACUGUGU....................................................... len:24 al:3
....................UGCCAUUUUUAUCAGUCcCUGUG........................................................ len:23 al:6
....................UGCCAUUUUUAcCAGUCACUGUGU....................................................... len:24 al:4
....................UGCgAUUUUUAUCAGUCACUGUG........................................................ len:23 al:3
....................UGCCAUUUUUAcCAGUCACUGUG........................................................ len:23 al:48
....................UGCCAUUUUUAUCAGUCACUGUGUGAUUAU................................................. len:30 al:1
....................UGCCAUUUUUAUCAGUCgCUGU......................................................... len:22 al:75
....................UGCCAUUUUUAUCAGUCACaGU......................................................... len:22 al:11
....................UGCCAUUUUUAUCAGUCACUG.......................................................... len:21 al:115
....................UGCCAUUUUaAUCAGUCACUGU......................................................... len:22 al:5
....................UGCCAUUUUUAUCAGUCACUGc......................................................... len:22 al:3609
....................UGCCAUUUUUAUCAGUCACUa.......................................................... len:21 al:11
....................UGCaAUUUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCAgUGUG........................................................ len:23 al:2
....................aGCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:20
....................UcCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:3
....................UGCCAUUUUUAUCuGUCACUGUG........................................................ len:23 al:8
....................UGCCAUUUUUAUCAGUCACaGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCAGcCACUG.......................................................... len:21 al:1
....................UGCCAUUUUUAUuAGUCACUGU......................................................... len:22 al:25
....................UGCCAUUUUUAUCAGUCACUGUa........................................................ len:23 al:3581
....................UGCCAUUUUUAUCAaUCACUGUGU....................................................... len:24 al:3
....................UGCCAUUUUUAUCuGUCACUGU......................................................... len:22 al:23
....................UGCCAUUUUUAUCAGaCACUGUG........................................................ len:23 al:9
....................UGCuAUUUUUAUCAGUCACUGUG........................................................ len:23 al:14
....................UGCCAUUUcUAUCAGUCACUGUG........................................................ len:23 al:28
....................UGCCcUUUUUAUCAGUCACUGUGU....................................................... len:24 al:1
....................gGCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:3
....................UaCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:26
....................UGCCAUUUUUAUCAGgCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAuUCACUGU......................................................... len:22 al:2
....................UGCCAUUUUUAUCAGUC.............................................................. len:17 al:1
....................UGuCAUUUUUAUCAGUCACUGU......................................................... len:22 al:40
....................UGCCAUUUUUAUCAGUCAC............................................................ len:19 al:2
....................UGCCAUUUUUAUCcGUCACUGUG........................................................ len:23 al:11
....................UGCCAUUUUUAUCAGUuACUGU......................................................... len:22 al:6
....................UGCCAUUUUUAUCAGUCACUGUGaG...................................................... len:25 al:72
....................UGCCAUUUUaAUCAGUCACUGUG........................................................ len:23 al:3
....................UGCuAUUUUUAUCAGUCACUGUGU....................................................... len:24 al:1
....................UGaCAUUUUUAUCAGUCACUGU......................................................... len:22 al:3
....................UGCCAUUUaUAUCAGUCACUGU......................................................... len:22 al:2
....................UGCCAUUUUUAUCAGUCACcGUGU....................................................... len:24 al:4
....................UGCCAUUUUUAUCAGUCACgGUG........................................................ len:23 al:4
....................UGCCAUUUUUAUCAGUCACcGU......................................................... len:22 al:44
....................UGCCAUUUUUAgCAGUCACUGU......................................................... len:22 al:8
....................UGCCAUUUUUAUCAGUCACUGUcU....................................................... len:24 al:2
....................UGCCAUUgUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGUGUGAUUA.................................................. len:29 al:6
....................UGCCAUUUUcAUCAGUCACUGUGU....................................................... len:24 al:1
....................UGCCAUUUUUAUCgGUCACUGUG........................................................ len:23 al:47
....................UGCgAUUUUUAUCAGUCACUGU......................................................... len:22 al:8
....................UGCCAUUUUUAUCAGcCACUGUG........................................................ len:23 al:57
....................UGCCgUUUUUAUCAGUCACUGU......................................................... len:22 al:94
....................UGCCAUUUUUAUCAGUCAgUGU......................................................... len:22 al:20
....................UGCCAUUUUUAUCgGUCACUG.......................................................... len:21 al:1
....................UGCCAUUUgUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGcGU....................................................... len:24 al:7
....................UGCCAUUUUUAUCAGUCACUGUuU....................................................... len:24 al:23
....................UGCCAUUUUUAUCAGgCACUGU......................................................... len:22 al:1
....................UGCCAUUUcUAUCAGUCACUGU......................................................... len:22 al:33
....................UGCCAcUUUUAUCAGUCACUGUG........................................................ len:23 al:34
....................UGCCAUUUUUAUCAGUCACUGUGUaA..................................................... len:26 al:79
....................UGCCAUUUUUAUCAGUCACUGaG........................................................ len:23 al:4
....................UGCCAgUUUUAUCAGUCACUGU......................................................... len:22 al:2
....................UGCCAUUUUUAUCAGUCACUGUGUGu..................................................... len:26 al:1
....................UGCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:29630
....................UGCCAUgUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGUGa....................................................... len:24 al:24942
....................UGCCAUUUUUAUCAGUCACUaU......................................................... len:22 al:18
....................UGCCAUUUUUAUuAGUCACUGUG........................................................ len:23 al:11
....................UGCCAUUUUUAUCAGUCACc........................................................... len:20 al:1
....................UGCCAUUUUUAUCAGUCACUu.......................................................... len:21 al:2
....................UGCCAUUUUUAUCAGUCuCUGU......................................................... len:22 al:3
....................UGCCAUUUUUAUCAGUCAuUGUG........................................................ len:23 al:15
....................UGCCAUUUUUAUgAGUCACUGU......................................................... len:22 al:3
....................UGCCAaUUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAaCAGUCACUGUG........................................................ len:23 al:4
....................UGCCAUUUUUAUCAGUCAaUGUG........................................................ len:23 al:7
....................aGCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:34
....................UGCCAUUUUUAUCAGUCACaGUG........................................................ len:23 al:2
....................UGCCAUaUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUuUGU....................................................... len:24 al:2
....................UGCCAUUUUUgUCAGUCACUGUGU....................................................... len:24 al:3
....................UcCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGUc........................................................ len:23 al:57
....................UaCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:52
....................UGCCAUUUUcAUCAGUCACUGU......................................................... len:22 al:48
....................UGCCAUUUUUAUCAGUCACUGa......................................................... len:22 al:426
....................UGCCAUUUUgAUCAGUCACUGU......................................................... len:22 al:8
....................UGCCAUUUUUAUCAGcCACUGUGU....................................................... len:24 al:11
....................UGCCAUaUUUAUCAGUCACUGU......................................................... len:22 al:3
....................UGCCAUUUUUAUCAGUCcCUGU......................................................... len:22 al:11
....................UGCCAUUUUUAUCAGUCACUGgG........................................................ len:23 al:5
....................UGCCAUUgUUAUCAGUCACUGU......................................................... len:22 al:4
....................UGCCAUUUUUAUCAGUCACUGUu........................................................ len:23 al:448
....................UGCCAUUUUUAUCAGUCACUGUGaGA..................................................... len:26 al:30
....................UGCCAUUUUUAUgAGUCACUGUG........................................................ len:23 al:2
....................UGCCAUUUUgAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCgCUGUG........................................................ len:23 al:54
....................UGCCAUUUUUAUCAGUCACUGUGUG...................................................... len:25 al:1
....................UGCCuUUUUUAUCAGUCACUGUG........................................................ len:23 al:9
....................UGCCAUUUUUAgCAGUCACUGUG........................................................ len:23 al:7
....................UGuCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:17
....................UGCCuUUUUUAUCAGUCACUGU......................................................... len:22 al:11
....................UGCCAUUUUUAUCAGUCACUGUGg....................................................... len:24 al:345
....................UGCCAUUUUUAUCgGUCACUGU......................................................... len:22 al:157
....................UGgCAUUUUUAUCAGUCACUGU......................................................... len:22 al:4
....................UGCCAUcUUUAUCAGUCACUGU......................................................... len:22 al:51
....................UGCCAUUUUUAUaAGUCACUGUG........................................................ len:23 al:4
....................UuCCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:7
....................UGCCAUUUUUAUCAGcCACUGU......................................................... len:22 al:85
....................UGCCAUUUUUAUCAGUCACUcUG........................................................ len:23 al:1
....................UGCuAUUUUUAUCAGUCACUGU......................................................... len:22 al:45
....................cGCCAUUUUUAUCAGUCACUG.......................................................... len:21 al:1
....................UGCCuUUUUUAUCAGUCACUGUGUGA..................................................... len:26 al:1
....................UGCCAUUaUUAUCAGUCACUGU......................................................... len:22 al:4
....................UGCCAUUUUUAUCAGUCACgGU......................................................... len:22 al:20
....................UGCCAUUUUUAUCAGUCACUGUGUu...................................................... len:25 al:25
....................UGCCAUUUUUAcCAGUCACUG.......................................................... len:21 al:1
....................UuCCAUUUUUAUCAGUCACUGUGU....................................................... len:24 al:1
....................UuCCAUUUUUAUCAGUCACUGU......................................................... len:22 al:8
....................UGCCAUUUcUAUCAGUCACUGUGU....................................................... len:24 al:3
....................UGgCAUUUUUAUCAGUCACUGUG........................................................ len:23 al:2
....................UGCCcUUUUUAUCAGUCACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGUGUa...................................................... len:25 al:26
....................UGCCAUUUUUAUCAGUaACUGUG........................................................ len:23 al:1
....................UGCCAUUUUUAUCAGUCACUGUGUc...................................................... len:25 al:2
....................UGCCAUUUUUAUCAGUCACUGg......................................................... len:22 al:247
....................UGCCAUUUUUAUCAGUCACUGUGU....................................................... len:24 al:970
....................UGCCAUUUUUuUCAGUCACUGU......................................................... len:22 al:1
....................UGCCAUUUUUAcCAGUCACUGU......................................................... len:22 al:92
....................UGCCAUUUaUAUCAGUCACUGUG........................................................ len:23 al:3
....................UGCCAUUUUUAUCAGUuACUGUG........................................................ len:23 al:4
.....................GCCAUUUUUAUCAGUCACUGc......................................................... len:21 al:3
.....................GCCAUUUUUAUCAGUCACUGU......................................................... len:21 al:5
.....................GCCAUUUUUAUCAGUCACUGUGa....................................................... len:23 al:4
.....................GCCAUUUUUAUCAGUCACUGUGU....................................................... len:23 al:1
.....................GCCAUUUUUAUCAGUCACUGUG........................................................ len:22 al:2
......................CCAUUUUUAUCAGUCACUGU......................................................... len:20 al:2
......................CCAUUUUUAUCAGUCACUGUG........................................................ len:21 al:2
......................CCAUUUUUAUCAGUCACUGUa........................................................ len:21 al:1
.......................CAUUUUUAUCAGUCACUGc......................................................... len:19 al:1
.......................CAUUUUUAUCAGUCACUGUG........................................................ len:20 al:1
.......................CAUUUUUAUCAGUCACUGUGUGA..................................................... len:23 al:1
.......................CAUUUUUAUCAGUCACUGU......................................................... len:19 al:2
........................AUUUUUAUCAGUCACUGU......................................................... len:18 al:4
........................AUUUUUAUCAGUCACUGUGa....................................................... len:20 al:1
.........................UUUUUAUCAGUCACUGUGa....................................................... len:19 al:7
.........................UUUUUAUCAGUCACUGUa........................................................ len:18 al:2
.........................UUUUUAUCAGUCACUGUG........................................................ len:18 al:3
......................................................UCGCAGGACcGAUAGGAAUGGA....................... len:22 al:2
......................................................UCGCAGGACUGAUAGGAAUGa........................ len:21 al:1
......................................................UCGCAGGACUGAUAGGAAUGGc....................... len:22 al:1
......................................................UCGCAGGACUGAUcGGAAUGGA....................... len:22 al:1
......................................................UCGCAGGACUGAcAGGAAUGGA....................... len:22 al:1
......................................................UCGCAuGACUGAUAGGAAUGGA....................... len:22 al:1
......................................................UCGCAGGACUGAUAGGAAUGGg....................... len:22 al:2
......................................................UCGCAGGACUGAUAGGAAUGaA....................... len:22 al:1
......................................................UCGCgGGACUGAUAGGAAUGGA....................... len:22 al:2
......................................................UCGCAGGACUGAUAGGAAUGGu....................... len:22 al:1
......................................................UCGCAaGACUGAUAGGAAUGGA....................... len:22 al:1
......................................................UCGCAGGACUGAUAGGAgUGGA....................... len:22 al:2
......................................................UCGCAGGACUGAUAGGAAU.......................... len:19 al:3
......................................................UCGCAGGACUGgUAGGAAUGGA....................... len:22 al:1
......................................................UCGCAGGACUGAUAGGAAUGGA....................... len:22 al:210
.........................................................CuGGACUGAUAGGAAUGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAaGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGaAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGAgUG.................... len:22 al:2
.........................................................CAGGgCUGAUAGGAAUGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGAAUc.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGAAUa.................... len:22 al:36
.........................................................CAGGACUGAUAGGAAUGGAAc..................... len:21 al:1
.........................................................CAGGACUGAUAGGAAUGGAAUGu................... len:23 al:1
.........................................................CAGGACUGAUAGGAgUGGAAUG.................... len:22 al:3
.........................................................CgGGACUGAUAGGAAUGGAAUG.................... len:22 al:2
.........................................................CAGGACUGAUAGGAAUGGAAcG.................... len:22 al:2
.........................................................CAGGACcGAUAGGAAUGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGAAUu.................... len:22 al:5
.........................................................CAGGACUGAUAGGAAUGGAAgG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGA....................... len:19 al:1
.........................................................CAGGACUGAUAGGAAUGGAAUG.................... len:22 al:428
.........................................................CAGGACUGAUAGGAAUGGgAUG.................... len:22 al:3
.........................................................CAGGACUGgUAGGAAUGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUGGAAU..................... len:21 al:12
.........................................................CcGGACUGAUAGGAAUGGAAUG.................... len:22 al:1
.........................................................CAGGACUGAUAGGAAUuGAAUG.................... len:22 al:1
.........................................................CgGGACUGAUAGGAAUGGAAU..................... len:21 al:1
..........................................................AGGACUGAUAGGAAUGGAAUGa................... len:22 al:7
..........................................................AGGACUGAUAGGAAUGGAAUG.................... len:21 al:90
..........................................................AGGACUGAUAGGAAUGGAAUGCC.................. len:23 al:1
..........................................................AGGACUGAUAGGAAUGGAAUGC................... len:22 al:34
..........................................................AGGACcGAUAGGAAUGGAAU..................... len:20 al:1
..........................................................AGGACUGAUAGGAAUGGAA...................... len:19 al:1
..........................................................AGGACUGAUAGGAAUGGAAUGu................... len:22 al:38
..........................................................AGGACUGAUAGGAAUGGAAUa.................... len:21 al:11
..........................................................AGGgCUGAUAGGAAUGGAAUG.................... len:21 al:1
..........................................................AGGACUGAUAGGAAUGGAAcGC................... len:22 al:1
..........................................................AGGACUGAUAGGAAUGGAAUGCu.................. len:23 al:1
..........................................................AGGACUGAUAGGAAUGGAAU..................... len:20 al:13
..........................................................AGGACUGAUAGGgAUGGAAUG.................... len:21 al:1
..........................................................AGGACUGAUAGGAAUGGA....................... len:18 al:3
..........................................................AGGACUGAUAGGAAUGGuAUG.................... len:21 al:1
..........................................................AGGACaGAUAGGAAUGGAAUGC................... len:22 al:1
..........................................................AGGACUGuUAGGAAUGGAAUG.................... len:21 al:1