Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026857974.1:97441-97539 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_13226.ps.pdf
Locus Name: Cluster_13226
AUUAUAUGUUGACAAUCGAAGCCAUCAAGAAGGUUUGUGAACUGAUGUGAUAUUGCAGAUCACAGCCUGCUUUGGUGAGCUUCUGUUGGCAAUACACAA
......(((((.((((.((((((((((((.(((((.((((.(((..((...))..))).)))))))))..))))))).))))).)))).)))))..... (-33.80)
.....................CCAUCAAGAAGGUUUGUGAACUu....................................................... len:23 al:1
.....................CCAUCAAGAAGGUUUGUGAACU........................................................ len:22 al:15
.....................CCAUCAAGAAGGUUUGUGAACa........................................................ len:22 al:1
.....................CCAUCAAGAAGGUUUGUGAACUG....................................................... len:23 al:2
.....................CCAUCAAGAAGGUUUGUGAACUGu...................................................... len:24 al:1
.....................CCAUCAAGAAGGUUUGUGAACc........................................................ len:22 al:4
.....................CCAUCAAGAAGGUUUGUGAACcG....................................................... len:23 al:1
......................CAUCAAGAAGGUUUGUGAACUc....................................................... len:22 al:1
......................CAUCAAGAAGGUUUGUGAACcG....................................................... len:22 al:2
......................CAUCAAGAAGGcUUGUGAACUG....................................................... len:22 al:2
......................CAUCAAGAAGGUUUGUGAACc........................................................ len:21 al:28
......................uAUCAAGAAGGUUUGUGAACU........................................................ len:21 al:1
......................CAUCAAGAAGGUUaGUGAACU........................................................ len:21 al:1
......................CAUCAAGAAGGUUUGUGAACg........................................................ len:21 al:5
......................uAUCAAGAAGGUUUGUGAACUG....................................................... len:22 al:1
......................CAUCAAGAAGGUUUGUGAACUu....................................................... len:22 al:17
......................CAUCAAGAAGGUUUGUGAAC......................................................... len:20 al:2
......................CAUCAAGAAGGUcUGUGAACU........................................................ len:21 al:2
......................CAUCAAGAAGGUUUGUGAACa........................................................ len:21 al:13
......................CgUCAAGAAGGUUUGUGAACUG....................................................... len:22 al:2
......................CAUCAAGAAGGUUUGUGAACU........................................................ len:21 al:276
......................CAcCAAGAAGGUUUGUGAACUG....................................................... len:22 al:1
......................CgUCAAGAAGGUUUGUGAACU........................................................ len:21 al:1
......................CAUCAAGAAGGUUUGUGAACaG....................................................... len:22 al:1
......................CAUCAAGAAGGaUUGUGAACUG....................................................... len:22 al:1
......................CAUCAAGAAGGUUUGcGAACUG....................................................... len:22 al:5
......................CAUCAAGAAGGgUUGUGAACUG....................................................... len:22 al:1
......................CAUCAAGAAGGUUUGUGAgCUG....................................................... len:22 al:4
......................CAUCAAGAAGGUcUGUGAACUG....................................................... len:22 al:1
......................CAUCAAGAAGGUUUGUGAACUGc...................................................... len:23 al:3
......................CAUCgAGAAGGUUUGUGAACUGA...................................................... len:23 al:1
......................CAUCAAGAAGGUUUGUGgACUG....................................................... len:22 al:4
......................CAUCAAGAAGGUUUGUGAACUGA...................................................... len:23 al:11
......................CAUCAAGgAGGUUUGUGAACU........................................................ len:21 al:1
......................CAUCAgGAAGGUUUGUGAACUG....................................................... len:22 al:3
......................CAUCAAGAAGGUUgGUGAACU........................................................ len:21 al:1
......................CAUCAAGAAGGUUcGUGAACUG....................................................... len:22 al:2
......................CAUCAAGAAGGUUUGUGAACUG....................................................... len:22 al:509
......................CAcCAAGAAGGUUUGUGAACU........................................................ len:21 al:2
......................CAUCgAGAAGGUUUGUGAACUG....................................................... len:22 al:3
......................CAUCAAGAAGGUUUGUGAACUGu...................................................... len:23 al:16
......................CAUCAAGAAGGUUUGUGAgCU........................................................ len:21 al:2
......................CAUCAAGAAGGUUUGcGAACU........................................................ len:21 al:4
......................CAUCAAGAAGGUUUGUGAACUa....................................................... len:22 al:71
.......................AUCAAGAAGGUUUGUGAACU........................................................ len:20 al:2
.......................AUCAAGAAGGUUUGUGAACUG....................................................... len:21 al:4
.......................AUCAAGAAGGUUUGUGAACUa....................................................... len:21 al:1
........................UCAAGAAGGUUUGUGAACUG....................................................... len:20 al:1
.........................CAAGAAGGUUUGUGAACUa....................................................... len:19 al:1
..........................AAGAAGGUUUGUGAACUG....................................................... len:18 al:1
....................................................UUuCAGAUCACAGCCUGCUUUGGU....................... len:24 al:1
....................................................UUuCAGAUCACAGCCUGCUUUGG........................ len:23 al:4
.......................................................aAGAUCACAGCCUGCUUUGGUGAGC................... len:25 al:1
.........................................................GAUgACAGCCUGCUUUGGUGAGC................... len:23 al:5
.........................................................GAUCACAGCCUGCUUUaGUGAGC................... len:23 al:4
.........................................................GAUCACAGCCUGCUUUGGcGAGC................... len:23 al:23
.........................................................GAUCACAGCCUGCgUUGGUGAGC................... len:23 al:9
.........................................................GAUCACAGCCgGCUUUGGUGAGC................... len:23 al:4
.........................................................GAUCACAGCCUGCUUUGGUG...................... len:20 al:128
.........................................................GAUCACAGCCUGCUUUGGUGAGC................... len:23 al:10587
.........................................................GAUCACAGCCUGCUUUGGUu...................... len:20 al:1
.........................................................GAUCACAGCCUGCUUUGGUGAGCc.................. len:24 al:44
.........................................................GAUCACcGCCUGCUUUGGUGAGC................... len:23 al:3
.........................................................GAUCACAGCCcGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUUUGGUGcGC................... len:23 al:3
.........................................................GAUCACAaCCUGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUgUGGUGAGC................... len:23 al:8
.........................................................GAUCACAGCCUGCUUUGGUGAGuU.................. len:24 al:2
.........................................................GAUCACAGCCUGCUUUGGgGAGC................... len:23 al:8
.........................................................GAUCACAGCCUGCUUUGGUa...................... len:20 al:2
.........................................................GAUCACAGCCUGCUUUGGcG...................... len:20 al:1
.........................................................GuUCACAGCCUGCUUUGGUGAGC................... len:23 al:2
.........................................................GAUCACAGCCUGCUUUGGUGAGCa.................. len:24 al:145
.........................................................GAUCACAGCCUGCUUUGGUGAGg................... len:23 al:10
.........................................................GAUCACAGCCUGCUUUGGUGAGCUc................. len:25 al:2
.........................................................GAUCACAGgCUGCUUUGGUGAGC................... len:23 al:2
.........................................................GAUuACAGCCUGCUUUGGUGAGC................... len:23 al:8
.........................................................GAUCACAGCCUGCUUUGGUGAGCaU................. len:25 al:8
.........................................................GAcCACAGCCUGCUUUGGUGAGC................... len:23 al:38
.........................................................GAUCACAGCCUGCUUUcGUGAGC................... len:23 al:1
.........................................................GAUCACAGCCUGCUUcGGUGAGC................... len:23 al:15
.........................................................GAUCACAGCCUGCaUUGGUGAGC................... len:23 al:1
.........................................................GAUCACAGCCUGCUcUGGUGAGC................... len:23 al:22
.........................................................GAUCACAGCCUGCUUUGGUGAGu................... len:23 al:2514
.........................................................GAUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:269
.........................................................GAUCACAGCCUGCUUUGGUGgGC................... len:23 al:70
.........................................................GAUCACuGCCUGCUUUGGUGAGC................... len:23 al:9
.........................................................GAUCACAGCCUaCUUUGGUGAGC................... len:23 al:7
.........................................................GAUCACAGCCUGCUUgGGUG...................... len:20 al:1
.........................................................GAUCACAGCCUGCUUUGGUGAGCgU................. len:25 al:1
.........................................................GAUCACAGCCUGCUcUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUUUGGUGAGa................... len:23 al:388
.........................................................GAUCuCAGCCUGCUUUGGUGAGC................... len:23 al:7
.........................................................GcUCACAGCCUGCUUUGGUGAGC................... len:23 al:4
.........................................................GAUCACAGCCUGuUUUGGUGAGC................... len:23 al:10
.........................................................GAUCACAGCCcGCUUUGGUGAGC................... len:23 al:31
.........................................................GAUCACAGCCUGCUUUGGaGAGC................... len:23 al:1
.........................................................GAUCACAGCaUGCUUUGGUGAGC................... len:23 al:6
.........................................................GAUCACAGCCUGCUUcGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUUUGGUGAGCUa................. len:25 al:5
.........................................................GAUCACAGCgUGCUUUGGUGAGC................... len:23 al:2
.........................................................cAUCACAGCCUGCUUUGGUGAGC................... len:23 al:7
.........................................................GAUCACAGCCUGCUUUaGUGAGCU.................. len:24 al:1
.........................................................GAUCAuAGCCUGCUUUGGUGAGC................... len:23 al:13
.........................................................GAgCACAGCCUGCUUUGGUGAGC................... len:23 al:2
.........................................................GAUCACAGCCUGCUUUGGUGgGCU.................. len:24 al:5
.........................................................GAUCACAGCCUGCUaUGGUGAGC................... len:23 al:2
.........................................................GAUCACAGCCUGCUUUGuUGAGC................... len:23 al:15
.........................................................GAUCAaAGCCUGCUUUGGUGAGC................... len:23 al:1
.........................................................GAUCACAGCCUGCUUUGG........................ len:18 al:1
.........................................................aAUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GgUCACAGCCUGCUUUGGUGAGC................... len:23 al:39
.........................................................GAcCACAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACgGCCUGCUUUGGUGAGC................... len:23 al:33
.........................................................GAUCACAGCCUGCUUUuGUGAGC................... len:23 al:1
.........................................................GAaCACAGCCUGCUUUGGUGAGC................... len:23 al:3
.........................................................GAUCACAGCCUuCUUUGGUGAGC................... len:23 al:1
.........................................................GAUCACAuCCUGCUUUGGUGAGC................... len:23 al:1
.........................................................GAUCACAGCCUGCUUUGGUGuGC................... len:23 al:4
.........................................................GAUCgCAGCCUGCUUUGGUGAGC................... len:23 al:34
.........................................................GAUCACAGCCUGCUUUGGUGAa.................... len:22 al:8
.........................................................GAUCACAGCCUGCUUUGGUGAGCg.................. len:24 al:14
.........................................................GAUCACAGCuUGCUUUGGUGAGC................... len:23 al:12
.........................................................GAUCACAGCCUGCUUUGGUGAaC................... len:23 al:6
.........................................................GAUCACcGCCUGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUUgGGUGAGC................... len:23 al:1
.........................................................GAUCcCAGCCUGCUUUGGUGAGC................... len:23 al:6
.........................................................GAUCACAGCCUGuUUUGGUGAGCU.................. len:24 al:2
.........................................................GAUCACAGCCUGCUUUGGUGA..................... len:21 al:9
.........................................................GAUCAuAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.........................................................GAUCACAGCCUGCUUUGGUaAGC................... len:23 al:4
.........................................................GAUCACAGCCUGCUUUGcUGAGC................... len:23 al:21
.........................................................GAUCACAGCCUGCcUUGGUGAGC................... len:23 al:47
.........................................................GAUCACAGCCaGCUUUGGUGAGC................... len:23 al:8
.........................................................GAUCACAGCCUGCUUUGGUGAG.................... len:22 al:37
.........................................................GAUCACAGCCUGCUUUGaUGAGCU.................. len:24 al:3
.........................................................GAUCACAaCCUGCUUUGGUGAGC................... len:23 al:11
..........................................................AUCACAGCCUGCUUUGGUGAGu................... len:22 al:2
..........................................................AUCACAGCCUGuUUUGGUGAGC................... len:22 al:1
..........................................................AUCACAGCCUGCUUUGGUGAGC................... len:22 al:13
...........................................................UCACAGCCUGCUUUGGUGAGC................... len:21 al:3
...........................................................UCACAGCCUGCUUUGGUGAGu................... len:21 al:1
............................................................CACAGCCUGCUUUGGUGAGC................... len:20 al:2
.............................................................ACAGCCUGCUUUGGUGAGC................... len:19 al:43
.............................................................ACuGCCUGCUUUGGUGAGC................... len:19 al:1
.............................................................ACAGCCUGCcUUGGUGAGC................... len:19 al:1
.............................................................ACAGCCUGCUUUGGUGAGCU.................. len:20 al:1
.............................................................ACAGCCUGCUUUGGUGgGC................... len:19 al:1
.............................................................ACAGCCUGCUUUGGUGAGa................... len:19 al:3
.............................................................ACAGCCUGCUUUGGUGAGu................... len:19 al:8