Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026857919.1:8254-8350 minus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_13141.ps.pdf
Locus Name: Cluster_13141
GAUCUGUUGACAAUCGAAGCCAUCAAGAGGGUUUGUGAACUGAUGUGACAUUGCAGAUCACAGCCUGCUUUGGUGAGCUUCUGUUGGCAAUACACAA
....(((((.((((.((((((((((((.(((((.((((.(((..((...))..))).)))))))))..))))))).))))).)))).)))))..... (-33.90)
uAUCUGUUGACAAUCGAAGC............................................................................. len:20 al:1
.AUCUGUUGACAAUaGAAGC............................................................................. len:19 al:1
.AUCUGUUGACAAUCGgAGC............................................................................. len:19 al:2
.AUCUGUUGACAAUCGAAGC............................................................................. len:19 al:10
.AUCUGUUGACAAUCGAAGu............................................................................. len:19 al:2
.AUCUGUUGACAAUCGAAGa............................................................................. len:19 al:1
..cCUGUUGACAAUCGAAGC............................................................................. len:18 al:1
..UCUGUUGACAAUCGAAGC............................................................................. len:18 al:19
..UCUGUUGACAAUCGAAGu............................................................................. len:18 al:1
...................CCAcCAAGAGGGUUUGUGAACU........................................................ len:22 al:2
...................CCAUCAAGAGGGUUUGUGAACUG....................................................... len:23 al:6
...................CCAUCAAGAGGGUUUGUGAACUu....................................................... len:23 al:4
...................CCAUCAAGAGGGUUUGUGAACU........................................................ len:22 al:11
...................CCAUCAAGgGGGUUUGUGAACU........................................................ len:22 al:1
...................CCAUCAAGAGGGUUUGUGAACa........................................................ len:22 al:1
....................CAUCAAGAGGGUUUGUGAACUGg...................................................... len:23 al:1
....................uAUCAAGAGGGUUUGUGAACUG....................................................... len:22 al:1
....................CuUCAAGAGGGUUUGUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGUcUGUGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGAACa........................................................ len:21 al:20
....................CAUCAAGAGGGUUUGUGAgCUG....................................................... len:22 al:2
....................CgUCAAGAGGGUUUGUGAACU........................................................ len:21 al:3
....................CAUCAAGAGGGUUUGUGAACUGu...................................................... len:23 al:41
....................CAUCAAGAGGGUcUGUGAACUG....................................................... len:22 al:2
....................CAUCAAGgGGGUUUGUGAACU........................................................ len:21 al:2
....................CAUCAAGAGGGUUUGUGAgCU........................................................ len:21 al:4
....................CAUCAAGAGGGUUgGUGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGAACUGAg..................................................... len:24 al:1
....................CAUCAAGAGGGUUUGUGAACUGA...................................................... len:23 al:30
....................CAUCAAGcGGGUUUGUGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGAACg........................................................ len:21 al:8
....................CAUCAAGAGGGUUUGcGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGgACUG....................................................... len:22 al:4
....................CAUCAAGAGGGUUUGUGAACUu....................................................... len:22 al:9
....................CAUCAcGAGGGUUUGUGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUgGUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGUUUaUGAACU........................................................ len:21 al:1
....................CuUCAAGAGGGUUUGUGAACU........................................................ len:21 al:2
....................CAUCAAGAGGGUUUGUGAAu......................................................... len:20 al:2
....................CAUCAAGAGGGUUUGUGAACUa....................................................... len:22 al:65
....................CAUCAAGgGGGUUUGUGAACUG....................................................... len:22 al:3
....................CAUCAAGAGGGUUUcUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGUcUGUGAACUGA...................................................... len:23 al:1
....................CAcCAAGAGGGUUUGUGAACUG....................................................... len:22 al:3
....................CgUCAAGAGGGUUUGUGAACUGA...................................................... len:23 al:1
....................CAUCAAGAGGGUUUGUGAACcG....................................................... len:22 al:1
....................CAUCAAGAGGGUUUGUGAACUG....................................................... len:22 al:512
....................CgUCAAGAGGGUUUGUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGUUUGUGuACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGcGAACUG....................................................... len:22 al:3
....................CAUCAAGAGGGUUUGUGAACUc....................................................... len:22 al:3
....................CAUCgAGAGGGUUUGUGAACUG....................................................... len:22 al:4
....................CAUCAAGAGGGUUcGUGAACU........................................................ len:21 al:1
....................CAUCAgGAGGGUUUGUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGUUUGUGgACU........................................................ len:21 al:4
....................CAUCAAGAGGGUUcGUGAACUG....................................................... len:22 al:4
....................CAUCAAGgGGGUUUGUGAACUGA...................................................... len:23 al:1
....................CAUCAAGAGGGUUUGUGAAC......................................................... len:20 al:6
....................CAUCAAGAGGGUUUGUGAACUGc...................................................... len:23 al:4
....................CAUCAgGAGGGUUUGUGAACU........................................................ len:21 al:2
....................CAUCAAGAGGGUUUGUaAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGAACU........................................................ len:21 al:467
....................CAUCAAGAcGGUUUGUGAACUG....................................................... len:22 al:2
....................uAUCAAGAGGGUUUGUGAACU........................................................ len:21 al:1
....................CAUCgAGAGGGUUUGUGAACU........................................................ len:21 al:1
....................CAUCAAGAGGGUUUGUGAACc........................................................ len:21 al:56
....................CAUCAAGAGGGUUUGUGAACUGAa..................................................... len:24 al:6
....................CAUCAAGAGGGcUUGUGAACUG....................................................... len:22 al:1
....................CAUCAAGAGGGcUUGUGAACU........................................................ len:21 al:1
.....................AUCAAGAGGGUUUGUGAACU........................................................ len:20 al:2
.....................AUCAAGAGGGUUUGUGAACUG....................................................... len:21 al:2
........................AAGAGGGUUUGUGAACUG....................................................... len:18 al:2
..................................................UUuCAGAUCACAGCCUGCUUUGG........................ len:23 al:5
.....................................................aAGAUCACAGCCUGCUUUGGUGAGC................... len:25 al:6
.......................................................GAUCACAGCCUGCUUUGGUGuGC................... len:23 al:7
.......................................................GAUCACAGCCUGCUUUGGUGAGCg.................. len:24 al:11
.......................................................GAUCACAGCCUGCUUUGaUGAGCU.................. len:24 al:3
.......................................................GAUCACAGCCUGCUcUGGUGAGC................... len:23 al:25
.......................................................GAaCACAGCCUGCUUUGGUGAGC................... len:23 al:6
.......................................................GAUCACAGCCcGCUUUGGUGAGCU.................. len:24 al:2
.......................................................GAUCACAGCCaGCUUUGGUGAGC................... len:23 al:5
.......................................................GAUCACAGCCUGCUUUuGUG...................... len:20 al:2
.......................................................GAUCgCAGCCUGCUUUGGUGAGCU.................. len:24 al:2
.......................................................GAUCACAGCCUGCUUaGGUGAGC................... len:23 al:4
.......................................................GAUCACAGCCUGCUUUGGUaAGC................... len:23 al:5
.......................................................GAUCACAGCCUGCUUUGGcGAGC................... len:23 al:23
.......................................................GAUCACAGCCUGCUUUGGaGAGC................... len:23 al:3
.......................................................GAUCACAGCCUGCUUUGGU....................... len:19 al:2
.......................................................GAUCACAGCCUGCUUUGGUGAGCa.................. len:24 al:127
.......................................................GAUCACAGCCUGCgUUGGUGAGC................... len:23 al:11
.......................................................GAUCACAGCCUGCaUUGGUGAGC................... len:23 al:4
.......................................................GAUCACAGCCUGCUUUGGUGgGC................... len:23 al:86
.......................................................GAUCACAGCCUGCUUUGGUGAG.................... len:22 al:41
.......................................................GAUgACAGCCUGCUUUGGUG...................... len:20 al:1
.......................................................GAUCACAGCCUGCUUUGGUGAGCgU................. len:25 al:2
.......................................................GAUCACAGCCUGaUUUGGUGAGC................... len:23 al:1
.......................................................GAUCACAGCCUGCUUUGGUGAuC................... len:23 al:2
.......................................................GAUCACAGCCUGCUUUaGUGAGC................... len:23 al:4
.......................................................GAUCACcGCCUGCUUUGGUGAGC................... len:23 al:9
.......................................................GAUCACAaCCUGCUUUGGUGAGC................... len:23 al:12
.......................................................GAUCACAGCCUGCUUUGcUGAGC................... len:23 al:23
.......................................................GAUCACAGCCUGCUUUGGUGgGCU.................. len:24 al:2
.......................................................GAUCACAGCCUGCUUUGGUGAGCcU................. len:25 al:1
.......................................................GAUCACAGCCUaCUUUGGUGAGC................... len:23 al:13
.......................................................GAUCACAGCCUGCUUUGGUGAGu................... len:23 al:2258
.......................................................GAUCACAGCCUGCUUUGGUGA..................... len:21 al:11
.......................................................GAUCACAGCCUGCUUcGGUGAG.................... len:22 al:1
.......................................................GAUCACAGCCaGCUUUGGUG...................... len:20 al:1
.......................................................GAUCACAGCCUGCUUUuGUGAGC................... len:23 al:2
.......................................................GAUCACAGCCUGCUUcGGUGAGC................... len:23 al:22
.......................................................GAUCACAGCCUaCUUUGGUG...................... len:20 al:1
.......................................................GAUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:295
.......................................................GAUCACAGCCUGCUUUGGUGAGg................... len:23 al:11
.......................................................GAUCACAGuCUGCUUUGGUGAGCU.................. len:24 al:2
.......................................................GAUCACAGCCUGuUUUGGUGAGC................... len:23 al:11
.......................................................GAUCACAGCuUGCUUUGGUGAGCU.................. len:24 al:1
.......................................................GAUCAaAGCCUGCUUUGGUGAGC................... len:23 al:3
.......................................................GAUCACAGCCUGCUUUGG........................ len:18 al:4
.......................................................GAUCACAGCCUGCUaUGGUGAGC................... len:23 al:1
.......................................................GAUCACAGCCUGCUUUGuUGAGCU.................. len:24 al:1
.......................................................GAUuACAGCCUGCUUUGGUGAGC................... len:23 al:9
.......................................................GAUCACAGCCUGCUUUGGUuAGC................... len:23 al:2
.......................................................GAUgACAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.......................................................GAUCACAGCCUGCUUUGGgG...................... len:20 al:1
.......................................................GAUCACAGgCUGCUUUGGUGAGCU.................. len:24 al:2
.......................................................GAUCAuAGCCUGCUUUGGUGAGC................... len:23 al:13
.......................................................GAUCACAGCCUGCUUUGGUGAGCUUu................ len:26 al:1
.......................................................GAUCgCAGCCUGCUUUGGUGAGC................... len:23 al:39
.......................................................GAUCACAGCCUGCUgUGGUGAGC................... len:23 al:5
.......................................................GAUCACAGCCUGCcUUGGUGAGC................... len:23 al:37
.......................................................GAcCACAGCCUGCUUUGGUGAGC................... len:23 al:32
.......................................................GgUCACAGCCUGCUUUGGUGAGC................... len:23 al:35
.......................................................GAUCACgGCCUGCUUUGGUG...................... len:20 al:1
.......................................................cAUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.......................................................GAUCACAGCCUGCUUUGGUGAaC................... len:23 al:7
.......................................................GAUCACAGCCUGCUUUGGUGAGCUUC................ len:26 al:1
.......................................................GAUCACuGCCUGCUUUGGUGAGC................... len:23 al:11
.......................................................GAUCACAGCCUGCUUUGGUGcGC................... len:23 al:2
.......................................................GAUCcCAGCCUGCUUUGGUGAGC................... len:23 al:5
.......................................................cAUCACAGCCUGCUUUGGUGAGC................... len:23 al:12
.......................................................GuUCACAGCCUGCUUUGGUGAGC................... len:23 al:9
.......................................................GAUCACAGCgUGCUUUGGUGAGC................... len:23 al:2
.......................................................GAUCACAGCCUGCUUUGGUGAGCUUa................ len:26 al:1
.......................................................GAUCACAGCCUGCUUUGuUGAGC................... len:23 al:21
.......................................................GAUCACAGCCUGCUUUGGgGAGC................... len:23 al:5
.......................................................GAUCACAGCCUGgUUUGGUGAGC................... len:23 al:1
.......................................................GAUCACAGCCUGCUUUGGUGAcC................... len:23 al:1
.......................................................GAUCACAGCCgGCUUUGGUGAGC................... len:23 al:1
.......................................................GAUCACAGCCUGCUUUGGUa...................... len:20 al:4
.......................................................GAUCuCAGCCUGCUUUGGUGAGC................... len:23 al:3
.......................................................GAUCACgGCCUGCUUUGGUGAGC................... len:23 al:39
.......................................................GAUCACAGCCUGCUUUGGUGAa.................... len:22 al:10
.......................................................GcUCACAGCCUGCUUUGGUGAGC................... len:23 al:6
.......................................................GAUCACAGCCUGCUUUGGUu...................... len:20 al:4
.......................................................GAUCACAGCCUGCUUgGGUGAGC................... len:23 al:2
.......................................................GAUCACAGCCUGCUUUGGUGAGCc.................. len:24 al:43
.......................................................GAUCACAGCCUGCUUUGGUG...................... len:20 al:123
.......................................................GgUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:3
.......................................................GAUCACAGCCUGCUUUGGUGAGCUa................. len:25 al:11
.......................................................GAUCACAGCCUGCUUUGGUGAGCUU................. len:25 al:2
.......................................................GAUCACAGCCUGCgUUGGUGAGCU.................. len:24 al:2
.......................................................GuUCACAGCCUGCUUUGGUGAGCU.................. len:24 al:1
.......................................................GAUCACAGCuUGCUUUGGUGAGC................... len:23 al:12
.......................................................GAUCACAGCCcGCUUUGGUGAGC................... len:23 al:26
.......................................................GAcCACAGCCUGCUUUGGUG...................... len:20 al:1
.......................................................GAUCACAGCaUGCUUUGGUGAGC................... len:23 al:3
.......................................................GAUCACAGCCUGCUUUGGUGAGCaU................. len:25 al:10
.......................................................GAUCACAGCCUGCUUUGGUGAGC................... len:23 al:10045
.......................................................GAUCACAGCCUGCUUUGGUGAGa................... len:23 al:354
........................................................AUCACAGCCUGCUUUGGUGgGC................... len:22 al:1
........................................................AUCACAGCCUGCUUUGGUGAGC................... len:22 al:22
........................................................AUCACAGCCUGCUUUGGUGAGu................... len:22 al:2
........................................................AUCACgGCCUGCUUUGGUGAGC................... len:22 al:1
........................................................AUCACAGCCUGCUUUGGUGAaC................... len:22 al:1
.........................................................UCACAGCCUGCUUUGGUGAGC................... len:21 al:2
..........................................................CACAGCCUGCUUUGGUGAGC................... len:20 al:3
...........................................................ACAGCCUGCUUUGGUGAGC................... len:19 al:37
...........................................................ACAGCCUGCcUUGGUGAGC................... len:19 al:2
...........................................................ACAGCCUGCUUUGGUGAGu................... len:19 al:9
...........................................................ACAGCCUGCUUUGGUGAGCU.................. len:20 al:3
............................................................CAGCCUGCUUUGGUGAGC................... len:18 al:1