Genome: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/data/genome_files/GCF_026571515.1_ASM2657151v2_genomic.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: NW_026857021.1:89841-89940 plus
PDF file name: /home/shared/8TB_HDD_01/sam/gitrepos/RobertsLab/project-clam-oa/output/02.00-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_11267.ps.pdf
Locus Name: Cluster_11267
GUAGAAGACUCUGGUUCUGUCUUUGGUUAUCUAGCUGUAUGAUUGACAUUUACCGCUCAUAAAGCUAGGUUACCAAAGGCAGAAAUAGAUGUCAGAACUA
......(((((((.(((((((((((((.((((((((.(((((.((........)).))))).)))))))).))))))))))))).)))).)))....... (-43.70)
...................UCUUUGGUUAcCUAGCUGUAU............................................................ len:21 al:1
...................UCUUUGGUUAUCUAGCUGUAUGAc......................................................... len:24 al:5
...................UCUUUGGUUAUCUAGCUGUgUGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAgG........................................................... len:22 al:1
...................UCUUUGGUUAUCUAGCUGUAUGc.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAUGuU......................................................... len:24 al:1
...................UCUUUGGUUAUCUAGCUGUAUGA.......................................................... len:23 al:538
...................UCUUUGGUgAUCUAGCUGUAUG........................................................... len:22 al:2
...................UCUUUGGUUAUCUcGCUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUgGCUGUAUG........................................................... len:22 al:1
...................UCUaUGGUUAUCUAGCUGUAUGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAcG........................................................... len:22 al:2
...................UCUUUGGUUAUCUuGCUGUAUG........................................................... len:22 al:1
...................UaUUUGGUUAUCUAGCUGUAUGAU......................................................... len:24 al:1
...................UCUUUGGUUAUCUAGCUGUAUGAaU........................................................ len:25 al:1
...................cCUUUGGUUAUCUAGCUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCUGUAUa........................................................... len:22 al:6
...................UCUUcGGUUAUCUAGCUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCUGUAUGg.......................................................... len:23 al:7
...................UCUUUGGUUAUCUAGCUGUA............................................................. len:20 al:1
...................UCUUUGGUUAUgUAGCUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCUGUAUGu.......................................................... len:23 al:7
...................UCUUUGGUUAUCUAGCUGUAUGAa......................................................... len:24 al:36
...................UCUUUGGUUAUCUAGCUGUAgGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCUuUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGaUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUgUCUAGCUGUAUGA.......................................................... len:23 al:4
...................UCUUUGGUUAUCUgGCUGUAUGA.......................................................... len:23 al:3
...................UCUUUGGUUAUCUAGCUGUAUGAg......................................................... len:24 al:3
...................UCUUUGGUUAUCUAGCUGUgUGAU......................................................... len:24 al:1
...................UCUUUGGUUAUCUAGCUGUAcGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAUaA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCUGU.............................................................. len:19 al:9
...................UCUUUGGUUAUCUAGCUGUAU............................................................ len:21 al:21
...................UCUcUGGUUAUCUAGCUGUAUGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAUG........................................................... len:22 al:88
...................UCUUUGGUUAcCUAGCUGUAUGA.......................................................... len:23 al:1
...................UCUUUGGUUAUCUAGCgGUAUGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAUGAU......................................................... len:24 al:24
...................UCUUUGGUUAUCcAGCUGUAUGA.......................................................... len:23 al:2
...................UCUUUGGUUAUCUAGCUGUAc............................................................ len:21 al:1
...................UCUUUGGUgAUCUAGCUGUAU............................................................ len:21 al:1
...................UCcUUGGUUAUCUAGCUGUAUG........................................................... len:22 al:2
...................UCUUUGcUUAUCUAGCUGUAUGA.......................................................... len:23 al:1
....................CUUUGGUUAUCUAGCUGUAUGA.......................................................... len:22 al:1
.....................UUUGGUUAUCUAGCUGUAUGA.......................................................... len:21 al:1
.....................UUUGGUUAUCUAGCUGUAUGAU......................................................... len:22 al:2
......................UUGGUUAUCUAGCUGUAUGA.......................................................... len:20 al:1
..........................................................AUAAAGCUAGGUUACCAA........................ len:18 al:1
..........................................................AUAAAGCUAGGUUACCAAAGGC.................... len:22 al:2
..........................................................AUAAAGCUAGGUUACCAAAGG..................... len:21 al:1
..........................................................AUAAAGCaAGGUUACCAAAGGC.................... len:22 al:1
...........................................................UAAAGCUAGGUUACCAAAGGu.................... len:21 al:1
...........................................................UAAAGCUAGGUUACCAAAGGC.................... len:21 al:1