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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.14

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-11-28, 09:00 PST based on data in: /home/shared/8TB_HDD_01/sam/gitrepos/ceasmallr/output/02.20-bismark-methylation-extraction

        General Statistics

        Showing 32/32 rows and 2/2 columns.
        Sample Name% mCpGM C's
        CF01-CM01-Zygote_R1_001
        17.4%
        40.4
        CF01-CM02-Larvae_R1_001
        18.1%
        592.4
        CF02-CM02-Zygote_R1_001
        20.0%
        176.7
        CF03-CM03-Zygote_R1_001
        20.6%
        277.7
        CF03-CM04-Larvae_R1_001
        17.3%
        517.9
        CF03-CM05-Larvae_R1_001
        19.3%
        568.3
        CF04-CM04-Zygote_R1_001
        19.0%
        334.4
        CF05-CM02-Larvae_R1_001
        17.5%
        788.0
        CF05-CM05-Zygote_R1_001
        21.1%
        414.1
        CF06-CM01-Zygote_R1_001
        21.5%
        328.1
        CF06-CM02-Larvae_R1_001
        24.3%
        296.2
        CF07-CM02-Zygote_R1_001
        18.3%
        211.2
        CF08-CM03-Zygote_R1_001
        19.2%
        194.3
        CF08-CM04-Larvae_R1_001
        17.9%
        6.2
        CF08-CM05-Larvae_R1_001
        14.8%
        6.2
        EF01-EM01-Zygote_R1_001
        24.2%
        319.8
        EF02-EM02-Zygote_R1_001
        15.3%
        343.4
        EF03-EM03-Zygote_R1_001
        21.1%
        184.0
        EF03-EM04-Larvae_R1_001
        21.9%
        511.3
        EF03-EM05-Larvae_R1_001
        20.0%
        542.7
        EF04-EM04-Zygote_R1_001
        17.4%
        97.3
        EF04-EM05-Larvae_R1_001
        17.2%
        741.0
        EF05-EM01-Larvae_R1_001
        18.5%
        435.6
        EF05-EM05-Zygote_R1_001
        13.1%
        53.8
        EF05-EM06-Larvae_R1_001
        19.2%
        829.4
        EF06-EM01-Larvae_R1_001
        17.2%
        740.8
        EF06-EM02-Larvae_R1_001
        20.0%
        536.6
        EF06-EM06-Larvae_R1_001
        20.5%
        117.4
        EF07-EM01-Zygote_R1_001
        15.3%
        136.8
        EF07-EM03-Larvae_R1_001
        17.8%
        555.8
        EF08-EM03-Larvae_R1_001
        18.0%
        639.3
        EF08-EM04-Larvae_R1_001
        19.7%
        484.5

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Cytosine Methylation

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        M-Bias

        This plot shows the average percentage methylation and coverage across reads. See the bismark user guide for more information on how these numbers are generated.

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        MultiQC v1.14 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.