CF07-CM02-Zygote_R1_001.fastp-trim_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 15006436 lines in total Total number of methylation call strings processed: 30012872 Final Cytosine Methylation Report ================================= Total number of C's analysed: 211150265 Total methylated C's in CpG context: 4856138 Total methylated C's in CHG context: 720434 Total methylated C's in CHH context: 6363501 Total C to T conversions in CpG context: 21617135 Total C to T conversions in CHG context: 39349371 Total C to T conversions in CHH context: 138243686 C methylated in CpG context: 18.3% C methylated in non-CpG context: 3.8%