CF06-CM02-Larvae_R1_001.fastp-trim_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 18004041 lines in total Total number of methylation call strings processed: 36008082 Final Cytosine Methylation Report ================================= Total number of C's analysed: 296227119 Total methylated C's in CpG context: 9763731 Total methylated C's in CHG context: 3127625 Total methylated C's in CHH context: 15615976 Total C to T conversions in CpG context: 30422981 Total C to T conversions in CHG context: 56321620 Total C to T conversions in CHH context: 180975186 C methylated in CpG context: 24.3% C methylated in non-CpG context: 7.3%