CF05-CM02-Larvae_R1_001.fastp-trim_bismark_bt2_pe.deduplicated.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.24.0 Bismark result file: paired-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 41919245 lines in total Total number of methylation call strings processed: 83838490 Final Cytosine Methylation Report ================================= Total number of C's analysed: 787999181 Total methylated C's in CpG context: 20565739 Total methylated C's in CHG context: 2279033 Total methylated C's in CHH context: 11070123 Total C to T conversions in CpG context: 97075246 Total C to T conversions in CHG context: 163685370 Total C to T conversions in CHH context: 493323670 C methylated in CpG context: 17.5% C methylated in non-CpG context: 2.0%