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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.14

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2024-11-26, 09:48 PST based on data in: /home/shared/8TB_HDD_01/sam/gitrepos/ceasmallr/output/02.10-bismark-deduplication

        General Statistics

        Showing 32/32 rows and 1/2 columns.
        Sample Name% Dups
        CF01-CM01-Zygote_R1_001
        24.4%
        CF01-CM02-Larvae_R1_001
        25.8%
        CF02-CM02-Zygote_R1_001
        40.6%
        CF03-CM03-Zygote_R1_001
        26.6%
        CF03-CM04-Larvae_R1_001
        56.2%
        CF03-CM05-Larvae_R1_001
        25.0%
        CF04-CM04-Zygote_R1_001
        32.3%
        CF05-CM02-Larvae_R1_001
        28.3%
        CF05-CM05-Zygote_R1_001
        28.2%
        CF06-CM01-Zygote_R1_001
        26.1%
        CF06-CM02-Larvae_R1_001
        26.9%
        CF07-CM02-Zygote_R1_001
        35.6%
        CF08-CM03-Zygote_R1_001
        37.4%
        CF08-CM04-Larvae_R1_001
        39.6%
        CF08-CM05-Larvae_R1_001
        85.2%
        EF01-EM01-Zygote_R1_001
        26.5%
        EF02-EM02-Zygote_R1_001
        26.6%
        EF03-EM03-Zygote_R1_001
        29.3%
        EF03-EM04-Larvae_R1_001
        27.7%
        EF03-EM05-Larvae_R1_001
        24.6%
        EF04-EM04-Zygote_R1_001
        32.3%
        EF04-EM05-Larvae_R1_001
        29.5%
        EF05-EM01-Larvae_R1_001
        28.3%
        EF05-EM05-Zygote_R1_001
        30.8%
        EF05-EM06-Larvae_R1_001
        53.4%
        EF06-EM01-Larvae_R1_001
        26.8%
        EF06-EM02-Larvae_R1_001
        28.1%
        EF06-EM06-Larvae_R1_001
        81.0%
        EF07-EM01-Zygote_R1_001
        53.3%
        EF07-EM03-Larvae_R1_001
        33.2%
        EF08-EM03-Larvae_R1_001
        44.8%
        EF08-EM04-Larvae_R1_001
        27.3%

        Bismark

        Bismark is a tool to map bisulfite converted sequence reads and determine cytosine methylation states.DOI: 10.1093/bioinformatics/btr167.

        Deduplication

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        MultiQC v1.14 - Written by Phil Ewels, available on GitHub.

        This report uses HighCharts, jQuery, jQuery UI, Bootstrap, FileSaver.js and clipboard.js.