## htsjdk.samtools.metrics.StringHeader
# MarkDuplicates MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=1048576 INPUT=[unique.bam] OUTPUT=sampleB/lambda/markDups.bam METRICS_FILE=sampleB/lambda.txt TMP_DIR=[tmp] VALIDATION_STRINGENCY=LENIENT    MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 SORTING_COLLECTION_SIZE_RATIO=0.25 TAG_DUPLICATE_SET_MEMBERS=false REMOVE_SEQUENCING_DUPLICATES=false TAGGING_POLICY=DontTag CLEAR_DT=true DUPLEX_UMI=false ADD_PG_TAG_TO_READS=true REMOVE_DUPLICATES=false ASSUME_SORTED=false DUPLICATE_SCORING_STRATEGY=SUM_OF_BASE_QUALITIES PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates READ_NAME_REGEX=<optimized capture of last three ':' separated fields as numeric values> OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 MAX_OPTICAL_DUPLICATE_SET_SIZE=300000 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false GA4GH_CLIENT_SECRETS=client_secrets.json USE_JDK_DEFLATER=false USE_JDK_INFLATER=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Wed Jul 20 10:16:28 PDT 2022

## METRICS CLASS	picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	SECONDARY_OR_SUPPLEMENTARY_RDS	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	1688	3036	0	0	64	116	0	0.038144	38711

## HISTOGRAM	java.lang.Double
BIN	CoverageMult
1.0	1
2.0	1.924569
3.0	2.779397
4.0	3.569745
5.0	4.300476
6.0	4.976088
7.0	5.600738
8.0	6.17827
9.0	6.712238
10.0	7.205929
11.0	7.66238
12.0	8.084401
13.0	8.474589
14.0	8.835344
15.0	9.168887
16.0	9.477271
17.0	9.762393
18.0	10.026008
19.0	10.269739
20.0	10.495085
21.0	10.703433
22.0	10.896065
23.0	11.074166
24.0	11.238833
25.0	11.39108
26.0	11.531842
27.0	11.661986
28.0	11.782314
29.0	11.893565
30.0	11.996424
31.0	12.091525
32.0	12.179452
33.0	12.260747
34.0	12.335909
35.0	12.405402
36.0	12.469654
37.0	12.529058
38.0	12.583982
39.0	12.634763
40.0	12.681713
41.0	12.725122
42.0	12.765256
43.0	12.802363
44.0	12.836671
45.0	12.868391
46.0	12.897719
47.0	12.924834
48.0	12.949904
49.0	12.973083
50.0	12.994514
51.0	13.014328
52.0	13.032647
53.0	13.049585
54.0	13.065245
55.0	13.079723
56.0	13.09311
57.0	13.105487
58.0	13.11693
59.0	13.12751
60.0	13.137292
61.0	13.146336
62.0	13.154698
63.0	13.162429
64.0	13.169577
65.0	13.176186
66.0	13.182296
67.0	13.187946
68.0	13.193169
69.0	13.197998
70.0	13.202463
71.0	13.206592
72.0	13.210408
73.0	13.213937
74.0	13.2172
75.0	13.220217
76.0	13.223006
77.0	13.225584
78.0	13.227969
79.0	13.230173
80.0	13.232211
81.0	13.234095
82.0	13.235837
83.0	13.237448
84.0	13.238937
85.0	13.240314
86.0	13.241587
87.0	13.242765
88.0	13.243853
89.0	13.244859
90.0	13.245789
91.0	13.246649
92.0	13.247445
93.0	13.24818
94.0	13.24886
95.0	13.249488
96.0	13.250069
97.0	13.250606
98.0	13.251103
99.0	13.251562
100.0	13.251987