WARNING	An augustus species is mentioned in the config file, dataset default species (fly) will be ignored
INFO	****************** Start a BUSCO 3.0.2 analysis, current time: 07/21/2021 10:37:23 ******************
INFO	Configuration loaded from /gscratch/scrubbed/samwhite/outputs/20210721_pcom_busco_cnidaria_transcriptome_v2.0/config.ini
INFO	Init tools...
INFO	Check dependencies...
INFO	Check input file...
INFO	To reproduce this run: python /gscratch/srlab/programs/busco-v3/scripts/run_BUSCO.py -i /gscratch/srlab/sam/data/P_compressa/transcriptomes/Cnidaria_MEGAN-extractions.fasta -o Cnidaria_MEGAN-extractions.fasta -l /gscratch/srlab/sam/data/databases/BUSCO/metazoa_odb9/ -m transcriptome -c 40 --long -z
INFO	Mode is: transcriptome
INFO	The lineage dataset is: metazoa_odb9 (eukaryota)
INFO	Temp directory is ./tmp/
INFO	****** Step 1/2, current time: 07/21/2021 10:37:25 ******
INFO	Create blast database...
INFO	[makeblastdb]	Building a new DB, current time: 07/21/2021 10:37:25
INFO	[makeblastdb]	New DB name:   /gscratch/scrubbed/samwhite/outputs/20210721_pcom_busco_cnidaria_transcriptome_v2.0/tmp/Cnidaria_MEGAN-extractions.fasta_560747313
INFO	[makeblastdb]	New DB title:  /gscratch/srlab/sam/data/P_compressa/transcriptomes/Cnidaria_MEGAN-extractions.fasta
INFO	[makeblastdb]	Sequence type: Nucleotide
INFO	[makeblastdb]	Keep MBits: T
INFO	[makeblastdb]	Maximum file size: 1000000000B
INFO	[makeblastdb]	Adding sequences from FASTA; added 261540 sequences in 8.50407 seconds.
INFO	[makeblastdb]	1 of 1 task(s) completed at 07/21/2021 10:37:34
INFO	Running tblastn, writing output to /gscratch/scrubbed/samwhite/outputs/20210721_pcom_busco_cnidaria_transcriptome_v2.0/run_Cnidaria_MEGAN-extractions.fasta/blast_output/tblastn_Cnidaria_MEGAN-extractions.fasta.tsv...
INFO	[tblastn]	Warning: [tblastn] Number of threads was reduced to 28 to match the number of available CPUs
INFO	[tblastn]	1 of 1 task(s) completed at 07/21/2021 10:41:48
INFO	****** Step 2/2, current time: 07/21/2021 10:41:48 ******
INFO	Maximum number of candidate transcript per BUSCO limited to: 3
INFO	Getting coordinates for candidate transcripts...
INFO	Extracting candidate transcripts...
INFO	Translating candidate transcripts...
INFO	Running HMMER to confirm transcript orthology:
INFO	[hmmsearch]	244 of 2438 task(s) completed at 07/21/2021 10:42:28
INFO	[hmmsearch]	488 of 2438 task(s) completed at 07/21/2021 10:42:29
INFO	[hmmsearch]	2438 of 2438 task(s) completed at 07/21/2021 10:42:33
INFO	Results:
INFO	C:94.1%[S:31.3%,D:62.8%],F:2.9%,M:3.0%,n:978
INFO	920 Complete BUSCOs (C)
INFO	306 Complete and single-copy BUSCOs (S)
INFO	614 Complete and duplicated BUSCOs (D)
INFO	28 Fragmented BUSCOs (F)
INFO	30 Missing BUSCOs (M)
INFO	978 Total BUSCO groups searched
INFO	BUSCO analysis done with WARNING(s). Total running time: 315.8285369873047 seconds
INFO	Results written in /gscratch/scrubbed/samwhite/outputs/20210721_pcom_busco_cnidaria_transcriptome_v2.0/run_Cnidaria_MEGAN-extractions.fasta/