[2019-01-24 12:09:49.599] [jointLog] [info] parsing read library format [2019-01-24 12:09:49.599] [jointLog] [info] There is 1 library. [2019-01-24 12:09:49.662] [jointLog] [info] Loading Quasi index [2019-01-24 12:09:49.662] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 12:09:52.451] [jointLog] [info] done [2019-01-24 12:09:52.451] [jointLog] [info] Index contained 49695 targets [2019-01-24 12:11:14.186] [fileLog] [info] At end of round 0 ================== Observed 33057710 total fragments (33057710 in most recent round) [2019-01-24 12:11:14.185] [jointLog] [info] Computed 73055 rich equivalence classes for further processing [2019-01-24 12:11:14.185] [jointLog] [info] Counted 15867401 total reads in the equivalence classes [2019-01-24 12:11:14.194] [jointLog] [warning] 0.0111532% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 12:11:14.194] [jointLog] [info] Mapping rate = 47.9991% [2019-01-24 12:11:14.194] [jointLog] [info] finished quantifyLibrary() [2019-01-24 12:11:14.195] [jointLog] [info] Starting optimizer [2019-01-24 12:11:14.236] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 12:11:14.238] [jointLog] [info] iteration = 0 | max rel diff. = 236.961 [2019-01-24 12:11:14.373] [jointLog] [info] iteration = 100 | max rel diff. = 0.111379 [2019-01-24 12:11:14.505] [jointLog] [info] iteration = 200 | max rel diff. = 0.0602566 [2019-01-24 12:11:14.637] [jointLog] [info] iteration = 300 | max rel diff. = 0.0399282 [2019-01-24 12:11:14.769] [jointLog] [info] iteration = 400 | max rel diff. = 0.0272308 [2019-01-24 12:11:14.902] [jointLog] [info] iteration = 500 | max rel diff. = 0.0237631 [2019-01-24 12:11:15.034] [jointLog] [info] iteration = 600 | max rel diff. = 0.019092 [2019-01-24 12:11:15.171] [jointLog] [info] iteration = 700 | max rel diff. = 0.0170366 [2019-01-24 12:11:15.304] [jointLog] [info] iteration = 800 | max rel diff. = 0.013673 [2019-01-24 12:11:15.438] [jointLog] [info] iteration = 900 | max rel diff. = 0.0132403 [2019-01-24 12:11:15.575] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0117298 [2019-01-24 12:11:15.710] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0106354 [2019-01-24 12:11:15.850] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0106355 [2019-01-24 12:11:15.896] [jointLog] [info] iteration = 1232 | max rel diff. = 0.00903964 [2019-01-24 12:11:15.900] [jointLog] [info] Finished optimizer [2019-01-24 12:11:15.900] [jointLog] [info] writing output [2019-01-24 12:11:15.996] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_K5_02/lib_format_counts.json for details [2019-01-24 12:50:03.143] [jointLog] [info] parsing read library format [2019-01-24 12:50:03.143] [jointLog] [info] There is 1 library. [2019-01-24 12:50:03.206] [jointLog] [info] Loading Quasi index [2019-01-24 12:50:03.206] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 12:50:06.110] [jointLog] [info] done [2019-01-24 12:50:06.110] [jointLog] [info] Index contained 49695 targets [2019-01-24 12:51:26.318] [fileLog] [info] At end of round 0 ================== Observed 33057710 total fragments (33057710 in most recent round) [2019-01-24 12:51:26.317] [jointLog] [info] Computed 73055 rich equivalence classes for further processing [2019-01-24 12:51:26.317] [jointLog] [info] Counted 15867401 total reads in the equivalence classes [2019-01-24 12:51:26.327] [jointLog] [warning] 0.0111532% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 12:51:26.327] [jointLog] [info] Mapping rate = 47.9991% [2019-01-24 12:51:26.327] [jointLog] [info] finished quantifyLibrary() [2019-01-24 12:51:26.327] [jointLog] [info] Starting optimizer [2019-01-24 12:51:26.368] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 12:51:26.369] [jointLog] [info] iteration = 0 | max rel diff. = 237.341 [2019-01-24 12:51:26.508] [jointLog] [info] iteration = 100 | max rel diff. = 0.111398 [2019-01-24 12:51:26.644] [jointLog] [info] iteration = 200 | max rel diff. = 0.0601223 [2019-01-24 12:51:26.779] [jointLog] [info] iteration = 300 | max rel diff. = 0.0399295 [2019-01-24 12:51:26.913] [jointLog] [info] iteration = 400 | max rel diff. = 0.0272393 [2019-01-24 12:51:27.045] [jointLog] [info] iteration = 500 | max rel diff. = 0.0236788 [2019-01-24 12:51:27.178] [jointLog] [info] iteration = 600 | max rel diff. = 0.0184076 [2019-01-24 12:51:27.311] [jointLog] [info] iteration = 700 | max rel diff. = 0.016927 [2019-01-24 12:51:27.443] [jointLog] [info] iteration = 800 | max rel diff. = 0.0149226 [2019-01-24 12:51:27.580] [jointLog] [info] iteration = 900 | max rel diff. = 0.0132384 [2019-01-24 12:51:27.712] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0118434 [2019-01-24 12:51:27.845] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0106359 [2019-01-24 12:51:27.978] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0106359 [2019-01-24 12:51:28.020] [jointLog] [info] iteration = 1232 | max rel diff. = 0.00903983 [2019-01-24 12:51:28.025] [jointLog] [info] Finished optimizer [2019-01-24 12:51:28.025] [jointLog] [info] writing output [2019-01-24 12:51:28.116] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_K5_02/lib_format_counts.json for details [2019-01-24 20:39:16.408] [jointLog] [info] parsing read library format [2019-01-24 20:39:16.408] [jointLog] [info] There is 1 library. [2019-01-24 20:39:16.468] [jointLog] [info] Loading Quasi index [2019-01-24 20:39:16.468] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 20:39:19.196] [jointLog] [info] done [2019-01-24 20:39:19.196] [jointLog] [info] Index contained 49695 targets [2019-01-24 20:40:37.158] [fileLog] [info] At end of round 0 ================== Observed 33057710 total fragments (33057710 in most recent round) [2019-01-24 20:40:37.157] [jointLog] [info] Computed 73055 rich equivalence classes for further processing [2019-01-24 20:40:37.157] [jointLog] [info] Counted 15867401 total reads in the equivalence classes [2019-01-24 20:40:37.167] [jointLog] [warning] 0.0111532% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 20:40:37.167] [jointLog] [info] Mapping rate = 47.9991% [2019-01-24 20:40:37.167] [jointLog] [info] finished quantifyLibrary() [2019-01-24 20:40:37.167] [jointLog] [info] Starting optimizer [2019-01-24 20:40:37.207] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 20:40:37.209] [jointLog] [info] iteration = 0 | max rel diff. = 236.959 [2019-01-24 20:40:37.343] [jointLog] [info] iteration = 100 | max rel diff. = 0.111357 [2019-01-24 20:40:37.474] [jointLog] [info] iteration = 200 | max rel diff. = 0.0601673 [2019-01-24 20:40:37.605] [jointLog] [info] iteration = 300 | max rel diff. = 0.0399289 [2019-01-24 20:40:37.739] [jointLog] [info] iteration = 400 | max rel diff. = 0.0272458 [2019-01-24 20:40:37.872] [jointLog] [info] iteration = 500 | max rel diff. = 0.0228421 [2019-01-24 20:40:38.006] [jointLog] [info] iteration = 600 | max rel diff. = 0.0184071 [2019-01-24 20:40:38.139] [jointLog] [info] iteration = 700 | max rel diff. = 0.0173163 [2019-01-24 20:40:38.273] [jointLog] [info] iteration = 800 | max rel diff. = 0.0146934 [2019-01-24 20:40:38.406] [jointLog] [info] iteration = 900 | max rel diff. = 0.0132414 [2019-01-24 20:40:38.540] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0119551 [2019-01-24 20:40:38.674] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0106357 [2019-01-24 20:40:38.810] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0106357 [2019-01-24 20:40:38.852] [jointLog] [info] iteration = 1232 | max rel diff. = 0.00903994 [2019-01-24 20:40:38.857] [jointLog] [info] Finished optimizer [2019-01-24 20:40:38.857] [jointLog] [info] writing output [2019-01-24 20:40:38.952] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_K5_02/lib_format_counts.json for details