[2019-01-24 12:14:47.928] [jointLog] [info] parsing read library format [2019-01-24 12:14:47.928] [jointLog] [info] There is 1 library. [2019-01-24 12:14:47.990] [jointLog] [info] Loading Quasi index [2019-01-24 12:14:47.990] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 12:14:50.681] [jointLog] [info] done [2019-01-24 12:14:50.681] [jointLog] [info] Index contained 49695 targets [2019-01-24 12:15:54.331] [fileLog] [info] At end of round 0 ================== Observed 26464646 total fragments (26464646 in most recent round) [2019-01-24 12:15:54.330] [jointLog] [info] Computed 69502 rich equivalence classes for further processing [2019-01-24 12:15:54.330] [jointLog] [info] Counted 13292770 total reads in the equivalence classes [2019-01-24 12:15:54.340] [jointLog] [warning] 0.0152392% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 12:15:54.340] [jointLog] [info] Mapping rate = 50.2284% [2019-01-24 12:15:54.340] [jointLog] [info] finished quantifyLibrary() [2019-01-24 12:15:54.340] [jointLog] [info] Starting optimizer [2019-01-24 12:15:54.382] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 12:15:54.384] [jointLog] [info] iteration = 0 | max rel diff. = 218.487 [2019-01-24 12:15:54.514] [jointLog] [info] iteration = 100 | max rel diff. = 0.108193 [2019-01-24 12:15:54.642] [jointLog] [info] iteration = 200 | max rel diff. = 0.0545094 [2019-01-24 12:15:54.772] [jointLog] [info] iteration = 300 | max rel diff. = 0.0417047 [2019-01-24 12:15:54.902] [jointLog] [info] iteration = 400 | max rel diff. = 0.0274443 [2019-01-24 12:15:55.033] [jointLog] [info] iteration = 500 | max rel diff. = 0.0231895 [2019-01-24 12:15:55.162] [jointLog] [info] iteration = 600 | max rel diff. = 0.018102 [2019-01-24 12:15:55.293] [jointLog] [info] iteration = 700 | max rel diff. = 0.0200761 [2019-01-24 12:15:55.420] [jointLog] [info] iteration = 800 | max rel diff. = 0.0145476 [2019-01-24 12:15:55.547] [jointLog] [info] iteration = 900 | max rel diff. = 0.0125081 [2019-01-24 12:15:55.680] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0111518 [2019-01-24 12:15:55.807] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0119514 [2019-01-24 12:15:55.935] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0102504 [2019-01-24 12:15:56.063] [jointLog] [info] iteration = 1300 | max rel diff. = 0.0102504 [2019-01-24 12:15:56.090] [jointLog] [info] iteration = 1322 | max rel diff. = 0.00815226 [2019-01-24 12:15:56.099] [jointLog] [info] Finished optimizer [2019-01-24 12:15:56.099] [jointLog] [info] writing output [2019-01-24 12:15:56.186] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_44_03/lib_format_counts.json for details [2019-01-24 12:55:03.276] [jointLog] [info] parsing read library format [2019-01-24 12:55:03.276] [jointLog] [info] There is 1 library. [2019-01-24 12:55:03.338] [jointLog] [info] Loading Quasi index [2019-01-24 12:55:03.338] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 12:55:06.028] [jointLog] [info] done [2019-01-24 12:55:06.028] [jointLog] [info] Index contained 49695 targets [2019-01-24 12:56:10.039] [fileLog] [info] At end of round 0 ================== Observed 26464646 total fragments (26464646 in most recent round) [2019-01-24 12:56:10.038] [jointLog] [info] Computed 69502 rich equivalence classes for further processing [2019-01-24 12:56:10.039] [jointLog] [info] Counted 13292770 total reads in the equivalence classes [2019-01-24 12:56:10.046] [jointLog] [warning] 0.0152392% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 12:56:10.046] [jointLog] [info] Mapping rate = 50.2284% [2019-01-24 12:56:10.046] [jointLog] [info] finished quantifyLibrary() [2019-01-24 12:56:10.047] [jointLog] [info] Starting optimizer [2019-01-24 12:56:10.084] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 12:56:10.086] [jointLog] [info] iteration = 0 | max rel diff. = 218.487 [2019-01-24 12:56:10.218] [jointLog] [info] iteration = 100 | max rel diff. = 0.108136 [2019-01-24 12:56:10.347] [jointLog] [info] iteration = 200 | max rel diff. = 0.0533801 [2019-01-24 12:56:10.478] [jointLog] [info] iteration = 300 | max rel diff. = 0.0417038 [2019-01-24 12:56:10.608] [jointLog] [info] iteration = 400 | max rel diff. = 0.0274443 [2019-01-24 12:56:10.741] [jointLog] [info] iteration = 500 | max rel diff. = 0.0231881 [2019-01-24 12:56:10.872] [jointLog] [info] iteration = 600 | max rel diff. = 0.0181229 [2019-01-24 12:56:11.004] [jointLog] [info] iteration = 700 | max rel diff. = 0.0200925 [2019-01-24 12:56:11.136] [jointLog] [info] iteration = 800 | max rel diff. = 0.0145477 [2019-01-24 12:56:11.268] [jointLog] [info] iteration = 900 | max rel diff. = 0.0124893 [2019-01-24 12:56:11.400] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0111834 [2019-01-24 12:56:11.533] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0119778 [2019-01-24 12:56:11.666] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0102503 [2019-01-24 12:56:11.801] [jointLog] [info] iteration = 1300 | max rel diff. = 0.0102503 [2019-01-24 12:56:11.832] [jointLog] [info] iteration = 1322 | max rel diff. = 0.00833208 [2019-01-24 12:56:11.840] [jointLog] [info] Finished optimizer [2019-01-24 12:56:11.840] [jointLog] [info] writing output [2019-01-24 12:56:11.928] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_44_03/lib_format_counts.json for details [2019-01-24 20:44:15.323] [jointLog] [info] parsing read library format [2019-01-24 20:44:15.323] [jointLog] [info] There is 1 library. [2019-01-24 20:44:15.384] [jointLog] [info] Loading Quasi index [2019-01-24 20:44:15.384] [jointLog] [info] Loading 32-bit quasi index [2019-01-24 20:44:18.241] [jointLog] [info] done [2019-01-24 20:44:18.241] [jointLog] [info] Index contained 49695 targets [2019-01-24 20:45:23.043] [jointLog] [info] Computed 69502 rich equivalence classes for further processing [2019-01-24 20:45:23.043] [jointLog] [info] Counted 13292770 total reads in the equivalence classes [2019-01-24 20:45:23.051] [jointLog] [warning] 0.0152392% of fragments were shorter than the k used to build the index (31). If this fraction is too large, consider re-building the index with a smaller k. The minimum read size found was 20. [2019-01-24 20:45:23.051] [jointLog] [info] Mapping rate = 50.2284% [2019-01-24 20:45:23.051] [jointLog] [info] finished quantifyLibrary() [2019-01-24 20:45:23.051] [jointLog] [info] Starting optimizer [2019-01-24 20:45:23.044] [fileLog] [info] At end of round 0 ================== Observed 26464646 total fragments (26464646 in most recent round) [2019-01-24 20:45:23.161] [jointLog] [info] Marked 0 weighted equivalence classes as degenerate [2019-01-24 20:45:23.162] [jointLog] [info] iteration = 0 | max rel diff. = 218.487 [2019-01-24 20:45:23.292] [jointLog] [info] iteration = 100 | max rel diff. = 0.108188 [2019-01-24 20:45:23.422] [jointLog] [info] iteration = 200 | max rel diff. = 0.0545827 [2019-01-24 20:45:23.551] [jointLog] [info] iteration = 300 | max rel diff. = 0.0417025 [2019-01-24 20:45:23.680] [jointLog] [info] iteration = 400 | max rel diff. = 0.0274441 [2019-01-24 20:45:23.810] [jointLog] [info] iteration = 500 | max rel diff. = 0.0231876 [2019-01-24 20:45:23.940] [jointLog] [info] iteration = 600 | max rel diff. = 0.0182964 [2019-01-24 20:45:24.069] [jointLog] [info] iteration = 700 | max rel diff. = 0.0200548 [2019-01-24 20:45:24.203] [jointLog] [info] iteration = 800 | max rel diff. = 0.0145479 [2019-01-24 20:45:24.330] [jointLog] [info] iteration = 900 | max rel diff. = 0.0124898 [2019-01-24 20:45:24.460] [jointLog] [info] iteration = 1000 | max rel diff. = 0.0111515 [2019-01-24 20:45:24.587] [jointLog] [info] iteration = 1100 | max rel diff. = 0.0119575 [2019-01-24 20:45:24.715] [jointLog] [info] iteration = 1200 | max rel diff. = 0.0102503 [2019-01-24 20:45:24.844] [jointLog] [info] iteration = 1300 | max rel diff. = 0.0102504 [2019-01-24 20:45:24.871] [jointLog] [info] iteration = 1322 | max rel diff. = 0.00815404 [2019-01-24 20:45:24.877] [jointLog] [info] Finished optimizer [2019-01-24 20:45:24.877] [jointLog] [info] writing output [2019-01-24 20:45:24.966] [jointLog] [warning] NOTE: Read Lib [( /dev/fd/63, /dev/fd/62 )] : Greater than 5% of the fragments disagreed with the provided library type; check the file: non-bleached_44_03/lib_format_counts.json for details