[2019-06-03 13:45:17.102] [jointLog] [info] [Step 1 of 4] : counting k-mers
[2019-06-03 13:45:36.510] [jointLog] [info] Replaced 0 non-ATCG nucleotides
[2019-06-03 13:45:36.510] [jointLog] [info] Clipped poly-A tails from 460 transcripts
[2019-06-03 13:45:36.536] [jointLog] [info] Building rank-select dictionary and saving to disk
[2019-06-03 13:45:36.572] [jointLog] [info] done
[2019-06-03 13:45:36.572] [jointLog] [info] Writing sequence data to file . . . 
[2019-06-03 13:45:36.963] [jointLog] [info] done
[2019-06-03 13:45:36.996] [jointLog] [info] Building 32-bit suffix array (length of generalized text is 500,664,606)
[2019-06-03 13:45:37.767] [jointLog] [info] Building suffix array . . . 
[2019-06-03 13:52:04.414] [jointLog] [info] khash had 289,716,831 keys
[2019-06-03 13:52:04.414] [jointLog] [info] saving hash to disk . . . 
[2019-06-03 13:52:26.448] [jointLog] [info] done