nf-core/methylseq v1.5
Run Name: jovial_miescher
nf-core/methylseq execution completed successfully!
The workflow was completed at 2020-12-11T08:45:16.418635-05:00 (duration: 1d 16h 27m 54s)
The command used to launch the workflow was as follows:
nextflow run nf-core/methylseq -resume -profile singularity --aligner bismark --fasta /data/putnamlab/REFS/Pverr/Pver_genome_assembly_v1.0.fasta --save_reference --reads '/data/putnamlab/KITT/hputnam/20201206_Becker_WGBS/*_R{1,2}_001.fastq.gz' --clip_r1 10 --clip_r2 10 --three_prime_clip_r1 10 --three_prime_clip_r2 10 --non_directional --cytosine_report --relax_mismatches --unmapped --outdir Becker_WGBS
Pipeline Configuration:
| Run Name | jovial_miescher |
|---|---|
| Reads | /data/putnamlab/KITT/hputnam/20201206_Becker_WGBS/*_R{1,2}_001.fastq.gz |
| Aligner | bismark |
| Data Type | Paired-End |
| Fasta Ref | /data/putnamlab/REFS/Pverr/Pver_genome_assembly_v1.0.fasta |
| Mismatch Func | L,0,-0.6 (Bismark default = L,0,-0.2) |
| Trimming | 5'R1: 10 / 5'R2: 10 / 3'R1: 10 / 3'R2: 10 |
| Deduplication | Yes |
| Directional Mode | No |
| All C Contexts | No |
| Cytosine report | Yes |
| Save Intermediates | Reference genome build, Unmapped reads |
| Output dir | Becker_WGBS |
| Launch dir | /data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5 |
| Working dir | /data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work |
| Pipeline dir | /home/hputnam/.nextflow/assets/nf-core/methylseq |
| User | hputnam |
| Config Profile | singularity |
| Container | singularity - nfcore/methylseq:1.5 |
| Max Resources | 128 GB memory, 16 cpus, 10d time per job |
| Date Started | 2020-12-09T16:17:22.082655-05:00 |
| Date Completed | 2020-12-11T08:45:16.418635-05:00 |
| Pipeline script file path | /home/hputnam/.nextflow/assets/nf-core/methylseq/main.nf |
| Pipeline script hash ID | d7d6a111ff642984c26a75a9a4b2fafe |
| Pipeline repository Git URL | https://github.com/nf-core/methylseq.git |
| Pipeline repository Git Commit | 4f31ed1792e3cc8ce0ea648b6ee8f541f70102f7 |
| Pipeline Git branch/tag | master |
| Nextflow Version | 20.04.1 |
| Nextflow Build | 5335 |
| Nextflow Compile Timestamp | 03-05-2020 19:37 UTC |
nf-core/methylseq