Module	Section	Sample Name	Source
Bismark	alignment	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/18_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/9_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/8_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/26_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/14_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/25_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/12_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/32_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/7_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/27_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/22_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/3_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/28_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/11_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/15_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/20_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/13_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/31_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/21_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/16_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/19_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/24_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/23_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/5_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/29_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/4_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/10_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/30_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/1_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/2_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/17_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	alignment	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/6_R1_001_val_1_bismark_bt2_PE_report.txt
Bismark	deduplication	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/24_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/10_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/27_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/21_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/32_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/4_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/26_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/14_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/25_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/2_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/12_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/1_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/23_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/29_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/6_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/31_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/19_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/18_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/7_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/5_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/8_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/11_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/15_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/17_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/16_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/9_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/30_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/3_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/22_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/28_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/20_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	deduplication	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/13_R1_001_val_1_bismark_bt2_pe.deduplication_report.txt
Bismark	methylation_extraction	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/4_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/1_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/9_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/30_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/22_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/26_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/11_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/25_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/20_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/6_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/19_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/16_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/18_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/7_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/27_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/24_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/10_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/5_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/8_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/21_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/32_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/23_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/17_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/31_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/3_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/29_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/28_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/15_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/14_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/2_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/12_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	methylation_extraction	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/13_R1_001_val_1_bismark_bt2_pe.deduplicated_splitting_report.txt
Bismark	m_bias	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/24_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/27_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/21_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/32_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/4_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/1_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/29_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/25_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/18_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/8_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/9_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/23_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/30_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/3_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/22_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/11_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/15_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/17_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/6_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/31_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/16_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/10_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/7_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/5_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/28_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/26_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/2_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/12_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/19_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/14_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/20_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
Bismark	m_bias	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/bismark/13_R1_001_val_1_bismark_bt2_pe.deduplicated.M-bias.txt
QualiMap	genome_results	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/16_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/10_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/32_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/30_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/9_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/26_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/15_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/25_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/19_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/4_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/23_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/3_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/29_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/2_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/17_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/24_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/5_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/7_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/8_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/22_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/28_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/11_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/13_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/20_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/6_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/18_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/27_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/21_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/1_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/14_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/12_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	genome_results	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/31_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/genome_results.txt
QualiMap	coverage_histogram	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/16_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/10_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/32_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/30_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/9_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/26_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/15_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/25_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/19_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/4_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/23_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/3_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/29_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/2_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/17_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/24_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/5_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/7_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/8_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/22_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/28_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/11_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/13_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/20_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/6_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/18_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/27_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/21_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/1_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/14_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/12_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	coverage_histogram	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/31_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/coverage_histogram.txt
QualiMap	insert_size_histogram	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/16_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/10_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/32_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/30_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/9_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/26_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/15_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/25_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/19_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/4_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/23_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/3_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/29_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/2_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/17_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/24_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/5_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/7_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/8_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/22_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/28_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/11_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/13_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/20_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/6_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/18_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/27_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/21_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/1_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/14_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/12_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	insert_size_histogram	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/31_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/insert_size_histogram.txt
QualiMap	mapped_gc_distribution	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/16_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/10_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/32_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/30_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/9_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/26_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/15_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/25_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/19_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/4_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/23_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/3_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/29_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/2_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/17_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/24_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/5_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/7_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/8_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/22_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/28_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/11_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/13_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/20_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/6_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/18_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/27_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/21_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/1_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/14_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/12_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
QualiMap	mapped_gc_distribution	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/qualimap/31_R1_001_val_1_bismark_bt2_pe.deduplicated_qualimap/raw_data_qualimapReport/mapped_reads_gc-content_distribution.txt
Preseq	all_sections	24_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/24_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	9_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/9_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	22_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/22_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	10_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/10_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	28_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/28_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	32_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/32_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	19_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/19_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	7_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/7_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	30_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/30_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	25_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/25_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	2_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/2_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	12_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/12_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	20_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/20_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	6_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/6_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	18_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/18_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	4_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/4_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	5_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/5_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	8_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/8_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	3_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/3_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	1_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/1_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	13_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/13_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	17_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/17_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	31_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/31_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	21_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/21_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	16_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/16_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	27_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/27_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	23_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/23_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	26_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/26_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	29_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/29_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	11_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/11_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	15_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/15_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Preseq	all_sections	14_R1_001_val_1	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/preseq/14_R1_001_val_1_bismark_bt2_pe.ccurve.txt
Cutadapt	all_sections	1_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/1_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	13_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/13_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	11_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/11_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	2_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/2_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	32_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/32_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	19_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/19_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	31_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/31_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	7_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/7_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	10_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/10_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	14_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/14_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	23_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/23_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	25_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/25_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	3_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/3_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	13_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/13_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	21_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/21_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	11_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/11_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	18_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/18_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	28_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/28_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	28_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/28_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/16_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	24_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/24_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	4_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/4_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	4_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/4_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	10_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/10_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	9_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/9_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	14_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/14_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	26_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/26_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	29_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/29_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	29_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/29_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	27_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/27_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	30_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/30_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	3_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/3_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	5_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/5_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	5_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/5_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	2_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/2_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	22_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/22_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	24_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/24_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	31_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/31_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	12_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/12_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	12_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/12_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	15_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/15_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	26_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/26_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	23_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/23_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	25_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/25_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	30_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/30_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	1_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/1_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	21_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/21_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	18_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/18_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	32_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/32_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	17_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/17_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	17_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/17_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	16_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/16_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	22_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/22_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	19_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/19_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	7_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/7_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	9_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/9_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	15_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/15_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	20_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/20_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	20_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/20_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	27_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/27_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	6_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/6_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	6_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/6_R2_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	8_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/8_R1_001.fastq.gz_trimming_report.txt
Cutadapt	all_sections	8_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/trimgalore/8_R2_001.fastq.gz_trimming_report.txt
FastQC	all_sections	21_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/21_R2_001_fastqc.zip
FastQC	all_sections	3_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/3_R1_001_fastqc.zip
FastQC	all_sections	4_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/4_R2_001_fastqc.zip
FastQC	all_sections	19_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/19_R2_001_fastqc.zip
FastQC	all_sections	23_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/23_R1_001_fastqc.zip
FastQC	all_sections	2_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/2_R2_001_fastqc.zip
FastQC	all_sections	24_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/24_R1_001_fastqc.zip
FastQC	all_sections	32_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/32_R1_001_fastqc.zip
FastQC	all_sections	11_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/11_R2_001_fastqc.zip
FastQC	all_sections	12_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/12_R1_001_fastqc.zip
FastQC	all_sections	1_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/1_R1_001_fastqc.zip
FastQC	all_sections	20_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/20_R2_001_fastqc.zip
FastQC	all_sections	29_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/29_R1_001_fastqc.zip
FastQC	all_sections	6_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/6_R1_001_fastqc.zip
FastQC	all_sections	6_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/6_R2_001_fastqc.zip
FastQC	all_sections	16_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/16_R2_001_fastqc.zip
FastQC	all_sections	4_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/4_R1_001_fastqc.zip
FastQC	all_sections	18_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/18_R1_001_fastqc.zip
FastQC	all_sections	13_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/13_R2_001_fastqc.zip
FastQC	all_sections	31_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/31_R1_001_fastqc.zip
FastQC	all_sections	31_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/31_R2_001_fastqc.zip
FastQC	all_sections	14_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/14_R1_001_fastqc.zip
FastQC	all_sections	28_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/28_R2_001_fastqc.zip
FastQC	all_sections	22_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/22_R1_001_fastqc.zip
FastQC	all_sections	32_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/32_R2_001_fastqc.zip
FastQC	all_sections	10_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/10_R1_001_fastqc.zip
FastQC	all_sections	9_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/9_R1_001_fastqc.zip
FastQC	all_sections	15_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/15_R2_001_fastqc.zip
FastQC	all_sections	17_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/17_R1_001_fastqc.zip
FastQC	all_sections	20_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/20_R1_001_fastqc.zip
FastQC	all_sections	25_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/25_R2_001_fastqc.zip
FastQC	all_sections	26_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/26_R1_001_fastqc.zip
FastQC	all_sections	29_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/29_R2_001_fastqc.zip
FastQC	all_sections	27_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/27_R2_001_fastqc.zip
FastQC	all_sections	21_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/21_R1_001_fastqc.zip
FastQC	all_sections	3_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/3_R2_001_fastqc.zip
FastQC	all_sections	19_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/19_R1_001_fastqc.zip
FastQC	all_sections	23_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/23_R2_001_fastqc.zip
FastQC	all_sections	14_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/14_R2_001_fastqc.zip
FastQC	all_sections	28_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/28_R1_001_fastqc.zip
FastQC	all_sections	22_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/22_R2_001_fastqc.zip
FastQC	all_sections	10_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/10_R2_001_fastqc.zip
FastQC	all_sections	7_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/7_R1_001_fastqc.zip
FastQC	all_sections	12_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/12_R2_001_fastqc.zip
FastQC	all_sections	15_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/15_R1_001_fastqc.zip
FastQC	all_sections	1_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/1_R2_001_fastqc.zip
FastQC	all_sections	17_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/17_R2_001_fastqc.zip
FastQC	all_sections	25_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/25_R1_001_fastqc.zip
FastQC	all_sections	26_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/26_R2_001_fastqc.zip
FastQC	all_sections	30_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/30_R1_001_fastqc.zip
FastQC	all_sections	8_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/8_R1_001_fastqc.zip
FastQC	all_sections	8_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/8_R2_001_fastqc.zip
FastQC	all_sections	16_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/16_R1_001_fastqc.zip
FastQC	all_sections	18_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/18_R2_001_fastqc.zip
FastQC	all_sections	13_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/13_R1_001_fastqc.zip
FastQC	all_sections	2_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/2_R1_001_fastqc.zip
FastQC	all_sections	24_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/24_R2_001_fastqc.zip
FastQC	all_sections	9_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/9_R2_001_fastqc.zip
FastQC	all_sections	7_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/7_R2_001_fastqc.zip
FastQC	all_sections	11_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/11_R1_001_fastqc.zip
FastQC	all_sections	27_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/27_R1_001_fastqc.zip
FastQC	all_sections	30_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/30_R2_001_fastqc.zip
FastQC	all_sections	5_R1_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/5_R1_001_fastqc.zip
FastQC	all_sections	5_R2_001	/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/fastqc/5_R2_001_fastqc.zip