Sample Cutadapt_mqc-generalstats-cutadapt-percent_trimmed FastQC_mqc-generalstats-fastqc-percent_duplicates FastQC_mqc-generalstats-fastqc-percent_gc FastQC_mqc-generalstats-fastqc-avg_sequence_length FastQC_mqc-generalstats-fastqc-percent_fails FastQC_mqc-generalstats-fastqc-total_sequences Bismark_mqc-generalstats-bismark-percent_cpg_meth Bismark_mqc-generalstats-bismark-percent_chg_meth Bismark_mqc-generalstats-bismark-percent_chh_meth Bismark_mqc-generalstats-bismark-total_c Bismark_mqc-generalstats-bismark-dup_reads_percent Bismark_mqc-generalstats-bismark-dedup_reads Bismark_mqc-generalstats-bismark-aligned_reads Bismark_mqc-generalstats-bismark-percent_aligned QualiMap_mqc-generalstats-qualimap-avg_gc QualiMap_mqc-generalstats-qualimap-median_insert_size QualiMap_mqc-generalstats-qualimap-1_x_pc QualiMap_mqc-generalstats-qualimap-5_x_pc QualiMap_mqc-generalstats-qualimap-10_x_pc QualiMap_mqc-generalstats-qualimap-30_x_pc QualiMap_mqc-generalstats-qualimap-50_x_pc QualiMap_mqc-generalstats-qualimap-median_coverage QualiMap_mqc-generalstats-qualimap-mean_coverage QualiMap_mqc-generalstats-qualimap-percentage_aligned QualiMap_mqc-generalstats-qualimap-mapped_reads QualiMap_mqc-generalstats-qualimap-total_reads QualiMap_mqc-generalstats-qualimap-general_error_rate 10_R1_001 8.199704466058023 48.67610075661478 23.0 150.0 9.090909090909092 71612079.0 10_R1_001_val_1 3.1 1.0 1.0 458927191.0 52.29 15069496.0 31592753.0 44.46906396765738 20.453766887076146 157 82.32244711352523 61.62684323323852 38.635600668455695 2.771954022091937 0.6565197349554539 7 1.3490672221155542 100.0 30138992.0 30138992.0 21.97 10_R2_001 8.243410854380214 47.793589757683705 25.0 150.0 27.27272727272727 71612079.0 11_R1_001 4.1862234914848155 43.92736751838305 22.0 150.0 18.181818181818183 47289050.0 11_R1_001_val_1 3.0 1.0 1.0 336625089.0 46.52 10054821.0 18807365.0 39.943775665905164 20.15929401022 181 80.18386021646383 52.281529303143316 23.597106290902378 0.9835963087207172 0.25368976209128935 5 1.0152450962771127 100.0 20109642.0 20109642.0 22.06 11_R2_001 4.367824066388872 42.60939642820119 23.0 150.0 27.27272727272727 47289050.0 12_R1_001 8.093296260779955 50.544995758709746 23.0 150.0 18.181818181818183 89746898.0 12_R1_001_val_1 3.0 1.0 1.0 549366392.0 54.14 18358120.0 40043484.0 44.882403091586035 20.465737765058755 152 83.21445110133409 65.82038227453823 46.79807291611176 4.987904806618691 0.9678772274259083 9 1.7504728168354524 100.0 36716240.0 36716240.0 22.009999999999998 12_R2_001 8.103885365857808 50.09354202156952 24.0 150.0 36.36363636363637 89746898.0 13_R1_001 7.202915852816978 60.69672544640744 22.0 150.0 18.181818181818183 78499344.0 13_R1_001_val_1 3.1 1.0 1.0 352049880.0 64.31 11771701.0 32987602.0 42.3210124989488 19.684216730711768 153 80.06265782648018 55.41572652086803 28.632898159648583 1.1974548670227798 0.2694687636451636 5 0.8962586704811973 100.0 23543402.0 23543402.0 22.17 13_R2_001 7.256778060888423 59.678472775422534 24.0 150.0 36.36363636363637 78499344.0 14_R1_001 10.55119662228687 34.22806518810734 24.0 150.0 9.090909090909092 59841119.0 14_R1_001_val_1 3.0 1.0 1.1 478880548.0 35.85 17135340.0 26718617.0 44.98295635176479 20.760824821740307 139 81.75497151162241 62.682273683060586 42.31989372206458 4.0282758130996505 0.8145344514656914 8 1.5315163900646764 100.0 34270680.0 34270680.0 22.040000000000003 14_R2_001 10.47332752361577 34.62728498814627 26.0 150.0 27.27272727272727 59841119.0 15_R1_001 6.449161326707902 50.3272445065825 23.0 150.0 18.181818181818183 69348538.0 15_R1_001_val_1 3.0 1.0 1.0 416672246.0 53.88 13617655.0 29533511.0 42.8106986365377 20.350392116518208 159 81.44782814789806 59.545344048960864 35.20786382547154 2.108886684792825 0.4953045407482965 6 1.094225211839009 100.0 27235310.0 27235310.0 22.02 15_R2_001 6.587799394800027 49.564628080872744 24.0 150.0 27.27272727272727 69348538.0 16_R1_001 8.088373245628908 64.5530604771485 22.0 150.0 18.181818181818183 55350153.0 16_R1_001_val_1 3.1 1.0 1.0 214263937.0 70.13 7552961.0 25292309.0 45.987189455032826 19.057592095348266 138 72.86435537162443 37.50743569679737 12.578296265092987 0.41739637759642695 0.10149204125715879 3 0.5342706694500012 100.0 15105922.0 15105922.0 22.56 16_R2_001 8.118117023693381 61.70697547189047 23.0 150.0 36.36363636363637 55350153.0 17_R1_001 8.898016152894945 42.04874286844902 24.0 150.0 9.090909090909092 58382641.0 17_R1_001_val_1 3.1 1.0 1.1 439467527.0 45.6 15190937.0 27929331.0 48.15052390162714 20.548603924202435 146 81.57175953775074 61.339286435600236 38.956773257045946 2.82261476147461 0.6277398768414764 7 1.3130055650309866 100.0 30381874.0 30381874.0 22.0 17_R2_001 8.868853945815847 42.04381745395366 25.0 150.0 27.27272727272727 58382641.0 18_R1_001 7.238864287078509 50.5876506112902 23.0 150.0 18.181818181818183 54925723.0 18_R1_001_val_1 3.0 1.0 1.1 350558193.0 55.25 11516037.0 25742983.0 47.14436245865365 20.100747022081944 156 79.63532808909474 54.45883493707892 28.040091793842205 1.3479530075263157 0.32322328061431554 5 0.9078880784592088 100.0 23032074.0 23032074.0 22.06 18_R2_001 7.356380603917281 50.02642706756269 24.0 150.0 36.36363636363637 54925723.0 19_R1_001 66.87866807567832 25.044598461480447 54.0 150.0 27.27272727272727 60983645.0 19_R1_001_val_1 8.2 8.6 8.5 7879330.0 28.4 512508.0 715828.0 6.917336042694471 26.2282482704767 73 8.98834923623141 0.18914040020499245 0.041024615615611625 0.007872681055094213 0.0035489613088527257 0 0.0 100.0 1025016.0 1025016.0 24.32 19_R2_001 66.39530881872781 25.56370171721197 53.0 150.0 36.36363636363637 60983645.0 1_R1_001 7.167345045470605 49.9317694258251 23.0 150.0 9.090909090909092 80678130.0 1_R1_001_val_1 3.0 1.0 1.0 503830552.0 53.18 16392378.0 35021924.0 43.67717135139497 20.333271776108674 159 82.89594838077825 63.957129230690256 42.74894826936337 3.6044577182652335 0.7692586511542857 8 1.569675968426628 100.0 32784756.0 32784756.0 22.05 1_R2_001 7.219710075084784 48.92374369320683 24.0 150.0 27.27272727272727 80678130.0 20_R1_001 17.640852480359783 37.39467599975963 28.0 150.0 9.090909090909092 55286435.0 20_R1_001_val_1 3.1 1.1 1.2 403491568.0 40.01 16455789.0 27438068.0 50.30108990374491 21.21465351512693 119 79.85947427257712 58.67674812060239 37.4577129197156 3.4501083870759803 0.689462737033704 6 1.0164471597479205 100.0 32911578.0 32911578.0 21.89 20_R2_001 17.307151588510514 37.91728178765701 29.0 150.0 36.36363636363637 55286435.0 21_R1_001 11.35609501077045 50.46174028973576 25.0 150.0 18.181818181818183 112298314.0 21_R1_001_val_1 3.0 1.0 1.1 680044677.0 54.63 24825270.0 54725938.0 49.096981361185435 20.3768201589953 135 84.60148315571348 70.22304091751079 55.807659153635065 11.19350938077148 2.155012932289913 11 1.9723780693554818 100.0 49650540.0 49650540.0 22.05 21_R2_001 11.235577166961445 50.263255100879235 26.0 150.0 36.36363636363637 112298314.0 22_R1_001 5.406092272174165 57.26612652571232 22.0 150.0 18.181818181818183 69683131.0 22_R1_001_val_1 3.0 1.0 1.0 378570655.0 62.11 12150109.0 32073783.0 46.23822387046221 20.23293585961426 162 80.87268800899797 56.79155953138972 30.844423517673576 1.5730003601680624 0.3737949280328517 6 1.199241775874799 100.0 24300218.0 24300218.0 22.02 22_R2_001 5.551241844552976 56.11014581757935 23.0 150.0 36.36363636363637 69683131.0 23_R1_001 8.039300336019188 46.537031975779755 23.0 150.0 9.090909090909092 63671364.0 23_R1_001_val_1 3.0 1.0 1.1 450375399.0 50.37 15179409.0 30593025.0 48.324037259693036 20.527446203966107 151 82.18296720486956 61.726617823210624 39.34216406924871 2.894732998190214 0.6460363177005565 7 1.3187227356579558 100.0 30358818.0 30358818.0 21.95 23_R2_001 8.06014815912116 46.29840171176725 25.0 150.0 27.27272727272727 63671364.0 24_R1_001 10.491590607223667 36.69332242562546 25.0 150.0 9.090909090909092 49118271.0 24_R1_001_val_1 3.0 1.0 1.1 398377410.0 39.3 14181942.0 23367479.0 47.90773062224095 20.759435328493122 140 80.31911127911677 58.31117278038764 35.182236613970495 2.349027635323348 0.5040576291186052 6 1.0744349799460822 100.0 28363884.0 28363884.0 21.959999999999997 24_R2_001 10.419160112537348 36.734929337189904 26.0 150.0 27.27272727272727 49118271.0 25_R1_001 10.431363087462039 41.12914632132573 24.0 150.0 9.090909090909092 69639904.0 25_R1_001_val_1 3.1 0.9 1.0 537632241.0 43.93 18804306.0 33544169.0 48.53567939017362 20.831834536166284 143 82.56475623132455 64.94205009250611 46.12128436510299 5.694801973767026 1.1423411062821982 8 1.4092011231852828 100.0 37608612.0 37608612.0 21.87 25_R2_001 10.368684751010953 40.955690470572925 26.0 150.0 27.27272727272727 69639904.0 26_R1_001 10.173445333634797 35.86554741588721 25.0 150.0 9.090909090909092 54984852.0 26_R1_001_val_1 3.1 1.0 1.0 464495536.0 37.53 16287735.0 26077701.0 47.744352807972454 20.9376323355575 143 81.23385631928171 61.51161841471294 40.45356739966611 3.6784453093787834 0.7869348647704087 7 1.250192757954442 100.0 32575470.0 32575470.0 21.86 26_R2_001 10.103587463204109 35.5577280856879 25.0 150.0 27.27272727272727 54984852.0 27_R1_001 13.517570038774664 43.88078338101704 26.0 150.0 9.090909090909092 113049760.0 27_R1_001_val_1 3.1 1.0 1.0 792670284.0 45.38 29699464.0 54383022.0 48.519394902731065 20.94289489394173 131 85.52321284818184 71.69353637379696 58.93211433590674 17.352319649100234 3.884062203977823 13 2.3776044767666002 100.0 59398928.0 59398928.0 21.88 27_R2_001 13.311439971212677 43.63533941405172 27.0 150.0 27.27272727272727 113049760.0 28_R1_001 7.11576527473134 48.549303080484115 23.0 150.0 9.090909090909092 85099811.0 28_R1_001_val_1 3.1 1.0 1.1 568783281.0 52.45 18717142.0 39374223.0 46.45870212438038 20.60985361448199 156 83.55424364762075 65.85749656763353 47.23573521887181 5.979067099279023 1.2073188454591814 9 1.7253184839297728 100.0 37434284.0 37434284.0 21.8 28_R2_001 7.2204939131220085 48.138723657925276 24.0 150.0 27.27272727272727 85099811.0 29_R1_001 7.670113022947106 43.05413563574187 23.0 150.0 9.090909090909092 70289502.0 29_R1_001_val_1 3.2 1.0 1.1 526208924.0 46.22 17720264.0 32959185.0 47.08537264872499 20.58814723368029 150 82.4255094335013 64.19491647139539 44.74537093528623 5.047775132134815 0.9935698781572516 8 1.4589583044824732 100.0 35440528.0 35440528.0 21.82 29_R2_001 7.782347895991637 42.838931094194834 24.0 150.0 27.27272727272727 70289502.0 2_R1_001 8.701554930327465 81.1967189334619 23.0 150.0 27.27272727272727 65903060.0 2_R1_001_val_1 3.2 1.2 1.4 93760774.0 87.21 3572313.0 27933860.0 42.78368787374267 20.016739744790723 125 54.55750363033985 13.497705624371491 2.25061150069821 0.06456250229398668 0.020711910600613396 1 0.10993625120431179 100.0 7144626.0 7144626.0 22.43 2_R2_001 8.714005449822816 79.0087191605078 24.0 150.0 36.36363636363637 65903060.0 30_R1_001 5.541856177685834 53.672182611383626 23.0 150.0 18.181818181818183 56933145.0 30_R1_001_val_1 2.9 1.0 1.0 347489675.0 58.14 10752532.0 25693689.0 45.39114910284352 20.325629050631033 171 80.01009067674987 52.877214732274524 25.459195883053503 1.2671768189920771 0.3342136547978843 5 0.9795597042544156 100.0 21505064.0 21505064.0 22.05 30_R2_001 5.677281684216344 52.465154342413484 24.0 150.0 36.36363636363637 56933145.0 31_R1_001 4.265700500220819 61.90295577908416 21.0 150.0 27.27272727272727 97300695.0 31_R1_001_val_1 2.9 0.8 0.9 462877240.0 60.93 14051730.0 35973758.0 37.16560890397857 20.015377260847227 179 82.86602583281157 62.23925140800388 37.843952602255115 2.2684866600867566 0.5366681788823041 7 1.3963379491888712 100.0 28103460.0 28103460.0 21.93 31_R2_001 4.525104238292783 58.69239730788519 23.0 150.0 36.36363636363637 97300695.0 32_R1_001 3.7340255734819796 50.80283142208828 21.0 150.0 27.27272727272727 106873701.0 32_R1_001_val_1 2.9 0.8 0.9 675189187.0 47.73 20035668.0 38346424.0 36.02249538911333 20.12959609047065 186 85.17442726968046 70.03000149553608 53.392052226245504 6.624798033904869 1.3283732744522527 10 1.8827598791963425 100.0 40071336.0 40071336.0 21.84 32_R2_001 3.971303198966289 49.046062894178455 22.0 150.0 27.27272727272727 106873701.0 3_R1_001 6.196403746692223 37.703894415785214 23.0 150.0 9.090909090909092 54750018.0 3_R1_001_val_1 3.2 1.0 1.1 460897012.0 39.82 14406015.0 23945918.0 43.9737793001604 20.691334483613193 170 81.85337949919477 60.99229136905067 37.881626151101685 2.683433402881657 0.6461067502857737 7 1.3579327844914428 100.0 28812030.0 28812030.0 21.97 3_R2_001 6.254568951313709 37.22323476851284 24.0 150.0 27.27272727272727 54750018.0 4_R1_001 6.3127526966882135 51.76586034476377 23.0 150.0 18.181818181818183 71628445.0 4_R1_001_val_1 3.1 1.0 1.1 446655122.0 56.28 13960238.0 31941411.0 44.857497648666545 20.63380686826416 171 82.32657136188273 60.32227722382228 36.26156158113564 2.3841046396104164 0.5778933171192616 7 1.4278557794422306 100.0 27920476.0 27920476.0 21.98 4_R2_001 6.398236836403937 50.6489506483659 24.0 150.0 36.36363636363637 71628445.0 5_R1_001 3.9946326331696222 64.34254016294872 21.0 150.0 18.181818181818183 75682300.0 5_R1_001_val_1 2.9 1.0 1.0 316684940.0 68.11 9686169.0 30383517.0 40.337995129412356 19.98929113663147 174 79.36194768888849 50.18768234056773 21.901098311542235 0.8529430747184238 0.21218893810100053 5 1.0518616780345822 100.0 19372338.0 19372338.0 22.15 5_R2_001 4.221630852480258 62.07498090965164 23.0 150.0 36.36363636363637 75682300.0 6_R1_001 6.413944604900303 41.94463601877161 23.0 150.0 9.090909090909092 41785116.0 6_R1_001_val_1 3.0 1.0 1.0 319800616.0 44.63 10039879.0 18138339.0 43.65880996078146 20.301218469998616 168 79.26287847600116 50.66528727777422 22.84111393254353 0.9592807727152617 0.2393838002394382 5 1.025785695330113 100.0 20079758.0 20079758.0 22.02 6_R2_001 6.493057288628802 41.417639415691596 24.0 150.0 27.27272727272727 41785116.0 7_R1_001 6.6397734419621335 46.465536031409535 23.0 150.0 9.090909090909092 67758826.0 7_R1_001_val_1 3.0 0.9 1.0 469794560.0 48.83 14970900.0 29266494.0 43.4199359450292 20.39777994434916 165 82.28376963753115 61.982411627381204 39.40055268239374 2.762882673047382 0.587836138001802 7 1.3196131769884822 100.0 29941800.0 29941800.0 21.89 7_R2_001 6.73723972136117 45.55291594790061 24.0 150.0 27.27272727272727 67758826.0 8_R1_001 5.743448709462845 53.37916410969705 22.0 150.0 27.27272727272727 66401459.0 8_R1_001_val_1 3.0 1.0 1.0 374039323.0 56.82 11723710.0 27159704.0 41.107245719892205 20.058119870265017 170 80.9825499643372 55.948463089769554 29.024402415124936 1.4146589731226573 0.36625417367600105 6 1.2552805818955173 100.0 23447420.0 23447420.0 21.97 8_R2_001 5.905816898792339 52.361796308909724 24.0 150.0 36.36363636363637 66401459.0 9_R1_001 7.70984923754186 53.55125889358557 23.0 150.0 18.181818181818183 69470721.0 9_R1_001_val_1 3.1 0.9 1.0 399974967.0 58.12 13133290.0 31368254.0 45.37863475501645 20.3395053854062 157 81.0079009644686 57.970600219500525 33.279971276540515 1.8722426595567039 0.43161061940260353 6 1.1383446247367366 100.0 26266580.0 26266580.0 22.0 9_R2_001 7.7418136099859005 52.46615341026253 24.0 150.0 36.36363636363637 69470721.0