[2020-12-11 08:43:12,482] multiqc [DEBUG ] No MultiQC config found: /opt/conda/envs/nf-core-methylseq-1.5/lib/python3.7/site-packages/multiqc_config.yaml
[2020-12-11 08:43:12,490] multiqc [DEBUG ] No MultiQC config found: /home/hputnam/.multiqc_config.yaml
[2020-12-11 08:43:12,506] multiqc [DEBUG ] Loading config settings from: multiqc_config.yaml
[2020-12-11 08:43:12,506] multiqc [DEBUG ] New config 'report_comment': This report has been generated by the nf-core/methylseq analysis pipeline. For information about how to interpret these results, please see the documentation.
[2020-12-11 08:43:12,507] multiqc [DEBUG ] New config 'report_section_order': {'software_versions': {'order': -1000}, 'nf-core-methylseq-summary': {'order': -1001}}
[2020-12-11 08:43:12,507] multiqc [DEBUG ] New config 'table_columns_visible': {'QualiMap': {'avg_gc': False, '30_x_pc': False, 'percentage_aligned': False}}
[2020-12-11 08:43:12,507] multiqc [DEBUG ] New config 'top_modules': ['bismark']
[2020-12-11 08:43:12,507] multiqc [DEBUG ] New config 'export_plots': True
[2020-12-11 08:43:12,511] multiqc [DEBUG ] Command used: /opt/conda/envs/nf-core-methylseq-1.5/bin/multiqc -f . -m custom_content -m picard -m qualimap -m bismark -m samtools -m preseq -m cutadapt -m fastqc
[2020-12-11 08:43:13,250] multiqc [WARNING] MultiQC Version v1.9 now available!
[2020-12-11 08:43:13,250] multiqc [INFO ] This is MultiQC v1.8
[2020-12-11 08:43:13,250] multiqc [DEBUG ] Command : /opt/conda/envs/nf-core-methylseq-1.5/bin/multiqc -f . -m custom_content -m picard -m qualimap -m bismark -m samtools -m preseq -m cutadapt -m fastqc
[2020-12-11 08:43:13,250] multiqc [DEBUG ] Working dir : /data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5
[2020-12-11 08:43:13,250] multiqc [INFO ] Template : default
[2020-12-11 08:43:13,250] multiqc [DEBUG ] Running Python 3.7.3 | packaged by conda-forge | (default, Dec 6 2019, 08:54:18) [GCC 7.3.0]
[2020-12-11 08:43:13,250] multiqc [INFO ] Searching : /data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5
[2020-12-11 08:43:13,251] multiqc [INFO ] Only using modules custom_content, picard, qualimap, bismark, samtools, preseq, cutadapt, fastqc
[2020-12-11 08:43:13,251] multiqc [DEBUG ] Analysing modules: bismark, custom_content, qualimap, preseq, picard, samtools, cutadapt, fastqc
[2020-12-11 08:43:13,251] multiqc [DEBUG ] Using temporary directory for creating report: /tmp/tmpgx7ol_e_
[2020-12-11 08:43:13,314] multiqc [DEBUG ] Ignored 170 search patterns as didn't match running modules.
[2020-12-11 08:43:32,240] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:33,896] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:35,755] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:36,857] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:38,628] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:40,055] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:41,330] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:42,527] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:43,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:44,632] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:45,833] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:47,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:49,058] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:50,621] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:51,476] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:52,166] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:54,127] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:55,578] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:56,798] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:58,545] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:43:59,751] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:00,970] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:02,758] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:03,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:05,454] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:06,211] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:07,567] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:08,868] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:10,269] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:11,913] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:13,314] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:14,159] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: qualimapReport.html
[2020-12-11 08:44:17,230] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13_R2_001_fastqc.html
[2020-12-11 08:44:17,233] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 23_R1_001_fastqc.html
[2020-12-11 08:44:17,237] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 23_R2_001_fastqc.html
[2020-12-11 08:44:17,241] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_R1_001_fastqc.html
[2020-12-11 08:44:17,245] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 14_R1_001_fastqc.html
[2020-12-11 08:44:17,250] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 24_R2_001_fastqc.html
[2020-12-11 08:44:17,257] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R2_001_fastqc.html
[2020-12-11 08:44:17,260] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9_R1_001_fastqc.html
[2020-12-11 08:44:17,264] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_R1_001_fastqc.html
[2020-12-11 08:44:17,271] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12_R1_001_fastqc.html
[2020-12-11 08:44:17,277] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_R1_001_fastqc.html
[2020-12-11 08:44:17,282] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 17_R1_001_fastqc.html
[2020-12-11 08:44:17,284] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 17_R2_001_fastqc.html
[2020-12-11 08:44:17,291] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 26_R1_001_fastqc.html
[2020-12-11 08:44:17,299] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 27_R1_001_fastqc.html
[2020-12-11 08:44:17,306] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_R2_001_fastqc.html
[2020-12-11 08:44:17,310] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16_R1_001_fastqc.html
[2020-12-11 08:44:17,317] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 18_R1_001_fastqc.html
[2020-12-11 08:44:17,321] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13_R1_001_fastqc.html
[2020-12-11 08:44:17,332] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 28_R2_001_fastqc.html
[2020-12-11 08:44:17,343] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10_R2_001_fastqc.html
[2020-12-11 08:44:17,346] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_R2_001_fastqc.html
[2020-12-11 08:44:17,348] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12_R2_001_fastqc.html
[2020-12-11 08:44:17,350] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 15_R1_001_fastqc.html
[2020-12-11 08:44:17,351] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 15_R2_001_fastqc.html
[2020-12-11 08:44:17,362] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 29_R1_001_fastqc.html
[2020-12-11 08:44:17,365] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 27_R2_001_fastqc.html
[2020-12-11 08:44:17,369] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_R1_001_fastqc.html
[2020-12-11 08:44:17,370] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_R2_001_fastqc.html
[2020-12-11 08:44:17,374] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_R1_001_fastqc.html
[2020-12-11 08:44:17,376] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 19_R1_001_fastqc.html
[2020-12-11 08:44:17,379] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 18_R2_001_fastqc.html
[2020-12-11 08:44:17,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_R2_001_fastqc.html
[2020-12-11 08:44:17,383] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 14_R2_001_fastqc.html
[2020-12-11 08:44:17,387] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 28_R1_001_fastqc.html
[2020-12-11 08:44:17,390] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 24_R1_001_fastqc.html
[2020-12-11 08:44:17,394] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R1_001_fastqc.html
[2020-12-11 08:44:17,396] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10_R1_001_fastqc.html
[2020-12-11 08:44:17,408] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_R2_001_fastqc.html
[2020-12-11 08:44:17,413] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 20_R2_001_fastqc.html
[2020-12-11 08:44:17,415] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 25_R1_001_fastqc.html
[2020-12-11 08:44:17,419] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 25_R2_001_fastqc.html
[2020-12-11 08:44:17,423] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 29_R2_001_fastqc.html
[2020-12-11 08:44:17,427] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 30_R1_001_fastqc.html
[2020-12-11 08:44:17,431] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 30_R2_001_fastqc.html
[2020-12-11 08:44:17,433] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_R1_001_fastqc.html
[2020-12-11 08:44:17,436] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_R1_001_fastqc.html
[2020-12-11 08:44:17,438] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_R2_001_fastqc.html
[2020-12-11 08:44:17,443] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21_R1_001_fastqc.html
[2020-12-11 08:44:17,445] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21_R2_001_fastqc.html
[2020-12-11 08:44:17,446] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_R1_001_fastqc.html
[2020-12-11 08:44:17,448] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_R2_001_fastqc.html
[2020-12-11 08:44:17,451] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16_R2_001_fastqc.html
[2020-12-11 08:44:17,453] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_R2_001_fastqc.html
[2020-12-11 08:44:17,455] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 19_R2_001_fastqc.html
[2020-12-11 08:44:17,465] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R1_001_fastqc.html
[2020-12-11 08:44:17,466] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R2_001_fastqc.html
[2020-12-11 08:44:17,471] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 22_R1_001_fastqc.html
[2020-12-11 08:44:17,473] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 22_R2_001_fastqc.html
[2020-12-11 08:44:17,474] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9_R2_001_fastqc.html
[2020-12-11 08:44:17,481] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 11_R1_001_fastqc.html
[2020-12-11 08:44:17,484] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 11_R2_001_fastqc.html
[2020-12-11 08:44:17,486] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 20_R1_001_fastqc.html
[2020-12-11 08:44:17,487] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 26_R2_001_fastqc.html
[2020-12-11 08:44:18,378] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 18_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,382] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 7_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,385] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 30_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,388] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 3_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,391] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 22_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,395] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 14_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,398] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 20_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,401] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 17_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,404] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: bismark_summary_report.html
[2020-12-11 08:44:18,980] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 16_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,983] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 10_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,986] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 27_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,990] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 4_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,993] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 28_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:18,996] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 31_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,888] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 19_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,891] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 8_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,894] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 21_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,897] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 23_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,900] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 26_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,902] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 15_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,905] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 2_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,908] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 25_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:19,911] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 13_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,580] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 24_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,583] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 5_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,586] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 32_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,589] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 1_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,592] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 9_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,594] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 29_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,597] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 11_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,599] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 12_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:20,601] multiqc [DEBUG ] Ignoring file as matched an ignore pattern: 6_R1_001_val_1_bismark_bt2_PE_report.html
[2020-12-11 08:44:22,794] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.1.1
[2020-12-11 08:44:22,795] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.1.1
[2020-12-11 08:44:23,420] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark alignment reports
[2020-12-11 08:44:25,705] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark dedup reports
[2020-12-11 08:44:29,947] multiqc.modules.bismark.bismark [INFO ] Found 32 bismark methextract reports
[2020-12-11 08:44:35,300] multiqc.modules.custom_content.custom_content [INFO ] nf-core-methylseq-summary: Found 1 sample (html)
[2020-12-11 08:44:35,300] multiqc.modules.custom_content.custom_content [INFO ] nf-core-methylseq-summary: Found 1510 samples (html)
[2020-12-11 08:44:35,301] multiqc.modules.custom_content.custom_content [INFO ] software_versions: Found 1 sample (html)
[2020-12-11 08:44:35,301] multiqc.modules.custom_content.custom_content [INFO ] software_versions: Found 1138 samples (html)
[2020-12-11 08:44:40,422] multiqc.modules.qualimap.QM_BamQC [DEBUG ] Using default Qualimap thresholds: 1, 5, 10, 30, 50
[2020-12-11 08:44:44,311] multiqc.modules.qualimap.qualimap [INFO ] Found 32 BamQC reports
[2020-12-11 08:44:45,115] multiqc.modules.preseq.preseq [INFO ] Found 32 reports
[2020-12-11 08:44:46,379] multiqc [DEBUG ] No samples found: picard
[2020-12-11 08:44:46,384] multiqc [DEBUG ] No samples found: samtools
[2020-12-11 08:44:46,679] multiqc.modules.cutadapt.cutadapt [INFO ] Found 64 reports
[2020-12-11 08:44:58,863] multiqc.modules.fastqc.fastqc [INFO ] Found 64 reports
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'Bismark'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'Bismark'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'QualiMap'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'QualiMap'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'Preseq'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'Preseq'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'Cutadapt'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'Cutadapt'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'FastQC'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'FastQC'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'nf-core/methylseq Software Versions'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'nf-core/methylseq Software Versions'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'software_versions' not found for module 'nf-core/methylseq Workflow Summary'.
[2020-12-11 08:45:12,130] multiqc [DEBUG ] Reordering sections: anchor 'nf-core-methylseq-summary' not found for module 'nf-core/methylseq Workflow Summary'.
[2020-12-11 08:45:12,291] multiqc [INFO ] Compressing plot data
[2020-12-11 08:45:14,181] multiqc [INFO ] Report : multiqc_report.html
[2020-12-11 08:45:14,181] multiqc [INFO ] Data : multiqc_data
[2020-12-11 08:45:14,187] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_sequence_counts_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,212] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_deduplication_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,220] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CpG_R1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,226] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_sequence_duplication_levels_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,232] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_qualimap_gc_content_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,237] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_data.json' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,267] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CHG_R2.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,273] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_strand_alignment_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,297] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_qualimap_insert_size_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,304] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CHG_R1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,309] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_sources.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,316] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Counts.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,322] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_per_sequence_quality_scores_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,328] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_fastqc.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,335] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_preseq_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,341] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_adapter_content_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,348] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_alignment_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,354] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_overrepresented_sequencesi_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,378] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_qualimap_coverage_histogram_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,413] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CpG_R2.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,420] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_bismark_alignment.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,426] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_cutadapt_plot_Counts.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,432] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CHH_R1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,437] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_bismark_dedup.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,442] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_per_sequence_gc_content_plot_Percentages.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,448] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_general_stats.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,453] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_cutadapt.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,459] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_bismark_mbias_CHH_R2.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,465] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_per_base_n_content_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,471] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_qualimap_genome_fraction_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,477] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_cutadapt_plot_Obs_Exp.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,483] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_bismark_methextract.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,489] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/mqc_fastqc_per_base_sequence_quality_plot_1.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,494] multiqc [DEBUG ] Moving data file from '/tmp/tmpgx7ol_e_/multiqc_data/multiqc_qualimap_bamqc_genome_results.txt' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_data'
[2020-12-11 08:45:14,655] multiqc [INFO ] Plots : multiqc_plots
[2020-12-11 08:45:14,655] multiqc [DEBUG ] Moving plots directory from '/tmp/tmpgx7ol_e_/multiqc_plots/pdf' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_plots'
[2020-12-11 08:45:15,112] multiqc [DEBUG ] Moving plots directory from '/tmp/tmpgx7ol_e_/multiqc_plots/png' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_plots'
[2020-12-11 08:45:15,438] multiqc [DEBUG ] Moving plots directory from '/tmp/tmpgx7ol_e_/multiqc_plots/svg' to '/data/putnamlab/hputnam/Becker_E5/WGBS_Becker_E5/work/90/4a05028e893aa3d855b1f5e10214b5/multiqc_plots'
[2020-12-11 08:45:15,705] multiqc [INFO ] MultiQC complete