[2024-10-07 17:24:11,861] multiqc                                            [DEBUG  ]  This is MultiQC v1.14
[2024-10-07 17:24:11,862] multiqc                                            [DEBUG  ]  Command used: /home/sam/programs/mambaforge/bin/multiqc /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs -o /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs
[2024-10-07 17:24:12,608] multiqc                                            [WARNING]  MultiQC Version v1.25.1 now available!
[2024-10-07 17:24:12,608] multiqc                                            [DEBUG  ]  Working dir : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/code
[2024-10-07 17:24:12,609] multiqc                                            [DEBUG  ]  Template    : default
[2024-10-07 17:24:12,609] multiqc                                            [DEBUG  ]  Running Python 3.10.10 | packaged by conda-forge | (main, Mar 24 2023, 20:08:06) [GCC 11.3.0]
[2024-10-07 17:24:12,610] multiqc                                            [DEBUG  ]  Analysing modules: custom_content, ccs, ngsderive, purple, conpair, lima, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, hifiasm, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, bustools, goleft_indexcov, gffcompare, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, sambamba, gopeaks, homer, hops, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dragen_fastqc, dedup, pbmarkdup, damageprofiler, biobambam2, jcvi, mtnucratio, picard, vep, sentieon, prokka, qc3C, nanostat, samblaster, samtools, sexdeterrmine, eigenstratdatabasetools, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, snippy, umitools, bbmap, bismark, biscuit, diamond, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, cellranger, snpsplit, odgi, pangolin, nextclade, humid, kat, leehom, adapterRemoval, bbduk, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, motus, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, filtlong, prinseqplusplus, pychopper, porechop, pycoqc, minionqc, anglerfish, multivcfanalyzer, clusterflow, checkqc, bcl2fastq, bclconvert, interop, ivar, flash, seqyclean, optitype, whatshap
[2024-10-07 17:24:12,610] multiqc                                            [DEBUG  ]  Using temporary directory for creating report: /tmp/tmp33p_47_f
[2024-10-07 17:24:12,786] multiqc                                            [INFO   ]  Search path : /home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs
[2024-10-07 17:24:21,718] multiqc                                            [DEBUG  ]  Summary of files that were skipped by the search: [skipped_module_specific_max_filesize: 1539] // [skipped_no_match: 361] // [skipped_ignore_pattern: 178] // [skipped_directory_fn_ignore_dirs: 1]
[2024-10-07 17:24:22,065] multiqc.plots.bargraph                             [DEBUG  ]  Using matplotlib version 3.7.1
[2024-10-07 17:24:22,066] multiqc.plots.linegraph                            [DEBUG  ]  Using matplotlib version 3.7.1
[2024-10-07 17:24:22,066] multiqc                                            [DEBUG  ]  No samples found: custom_content
[2024-10-07 17:24:22,105] multiqc                                            [DEBUG  ]  No samples found: snippy
[2024-10-07 17:24:35,138] multiqc.modules.fastqc.fastqc                      [INFO   ]  Found 88 reports
[2024-10-07 17:24:37,373] multiqc                                            [INFO   ]  Compressing plot data
[2024-10-07 17:24:38,572] multiqc                                            [WARNING]  Previous MultiQC output found! Adjusting filenames..
[2024-10-07 17:24:38,572] multiqc                                            [WARNING]  Use -f or --force to overwrite existing reports instead
[2024-10-07 17:24:38,572] multiqc                                            [INFO   ]  Report      : ../output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_report_2.html
[2024-10-07 17:24:38,572] multiqc                                            [INFO   ]  Data        : ../output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data_2
[2024-10-07 17:24:38,572] multiqc                                            [DEBUG  ]  Moving data file from '/tmp/tmp33p_47_f/multiqc_data' to '/home/shared/8TB_HDD_01/sam/gitrepos/urol-e5/timeseries_molecular/D-Apul/output/01.00-D-Apul-RNAseq-trimming-fastp-FastQC-MultiQC/trimmed-fastqs/multiqc_data_2'
[2024-10-07 17:24:38,655] multiqc                                            [INFO   ]  MultiQC complete
[2024-10-07 17:24:38,655] multiqc                                            [WARNING]  1 flat-image plot used in the report due to large sample numbers