FastQCFastQC Report
Mon 7 Oct 2024
99--2C1_R1_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename99--2C1_R1_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19497641
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length15-130
%GC44

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCACAATGGACGAAAGTCTGATGGAGCAACGCCGCGTGAGTGAAGAAGG615610.3157356318130999No Hit
TGGTCAATGGGAGAGATCCTGAACCAGCCAAGCCGCGTGAGGGAAGACGG574770.29478950812562404No Hit
CTTCCACAATGGACGAAAGTCTGATGGAGCAACGCCGCGTGAGTGAAGAA541860.2779105431267301No Hit
TCTTCCACAATGGACGAAAGTCTGATGGAGCAACGCCGCGTGAGTGAAGA479890.24612721097901025No Hit
ATTGGTCAATGGGAGAGATCCTGAACCAGCCAAGCCGCGTGAGGGAAGAC459700.23577211212371793No Hit
TATTGGTCAATGGGAGAGATCCTGAACCAGCCAAGCCGCGTGAGGGAAGA413850.21225644681836126No Hit
TGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAAGT318280.1632402607064106No Hit
ATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGAA262730.13474963458399916No Hit
TATTGCACAATGGGGGAAACCCTGATGCAGCGACGCCGCGTGAGTGAAGA238410.12227633076227015No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)