FastQCFastQC Report
Mon 7 Oct 2024
81--1A11_R1_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename81--1A11_R1_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18612695
Total Bases2.3 Gbp
Sequences flagged as poor quality0
Sequence length15-130
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACGAGATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCAA1407110.7559947659379794No Hit
GCAACATTAGAGTTTGGTATTGGCAGTGCCTTGGGAGTTTTTGTCTCCCT1005130.5400238922950169No Hit
CTCCAGCAACATTAGAGTTTGGTATTGGCAGTGCCTTGGGAGTTTTTGTC806450.4332795438812058No Hit
GTTCGTTGTTCGTTGCCTCCCGATTTGACCTCGCGGCCATAGCTGGGCCA670180.36006607318284645No Hit
TGGTACGAGATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCA559500.3006012831564693No Hit
CGTTTCACCCAGGCTCGCGCCAAAGGCTGCGTCACGACCACTGCGCCCTC542940.2917041298962885No Hit
TAAGTTCGTTGTTCGTTGCCTCCCGATTTGACCTCGCGGCCATAGCTGGG490730.26365338281210754No Hit
CGTTGTTCGTTGCCTCCCGATTTGACCTCGCGGCCATAGCTGGGCCAATC471090.25310144500836657No Hit
TTTCCCATAAGGTGCCAAAGGGGTCATCCAATAACACCCTCTGATCCCTA460740.24754072422075363No Hit
AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGG426900.22935958494994949No Hit
TCTGTTCTCATTGAGCTCACCTTAGGACACCTGCGTTATCATTTGACAGA423360.22745765726027317No Hit
ACGAGATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCAAGCA400020.2149178289334242No Hit
ATGATCAAGTTTGACCAACTTCCCGGCATCCGCCGCTCTGTTGCCAGAGT394410.21190375708622528No Hit
ATTACTAAGGTTCCAGAAACCAACAAAATAGAACCAAAGTCCTATTCCAT375860.20193744108523778No Hit
GCCAGTTCTAAGTTCGTTGTTCGTTGCCTCCCGATTTGACCTCGCGGCCA357740.192202150199098No Hit
AATGATCAAGTTTGACCAACTTCCCGGCATCCGCCGCTCTGTTGCCAGAG344740.1852176699827725No Hit
TCGTTGCCTCCCGATTTGACCTCGCGGCCATAGCTGGGCCAATCCACGGG337960.18157499491610432No Hit
TCAAGTTTGACCAACTTCCCGGCATCCGCCGCTCTGTTGCCAGAGTAGCG316540.17006672059043573No Hit
TACGAGATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCAAGC287270.15434089474952445No Hit
GTACGAGATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCAAG284400.15279893642484338No Hit
CTCTAAATGATCAAGTTTGACCAACTTCCCGGCATCCGCCGCTCTGTTGC278440.1495968208795126No Hit
TGATCAAGTTTGACCAACTTCCCGGCATCCGCCGCTCTGTTGCCAGAGTA272480.14639470533418186No Hit
TGCAATGATCTATCCCCAGCACGACGATGTTTAAAAGATTACCCACACCT267010.1434558509662357No Hit
TTGTTCTATCAACCAGAGGCTGCTCACCTCGGAGACCTGCTGCGGTTATG266250.14304752750743513No Hit
GCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAATGGATCCT264050.14186553854774925No Hit
GCCGCGAGAGAACCGGGCTGTAACAGTCCGAACGCGAGCGTCCGGACCTA257000.13807780119966506No Hit
CCCCGGAACCCAAAAACTTTGGTTTCCCATAAGGTGCCAAAGGGGTCATC253440.13616512815580978No Hit
CTGTTCTCATTGAGCTCACCTTAGGACACCTGCGTTATCATTTGACAGAT250370.1345157162893391No Hit
TTTTTCAAAGTAAACGTCACAGATCCTGAGCACACTCAGTTAAGAGCACA241250.1296158347837323No Hit
GCCGTTTCACCCAGGCTCGCGCCAAAGGCTGCGTCACGACCACTGCGCCC239790.12883142392866803No Hit
TAATTTTTTCAAAGTAAACGTCACAGATCCTGAGCACACTCAGTTAAGAG239060.12843921850113593No Hit
CCACCAGAGTTTCCTCTGGCTTCACCCTATTCAGGCATAGTTCACCATCT237880.12780524260457712No Hit
TGCGTTGCCGCACTTGCCACCCACGAGGAGTGGCAATATCCGTGTTCCGG236200.1269026328535443No Hit
AGGATTTAAGTTGTACTCATTCCAATTACAAGACTTGTAAAAGCCCTGTA230690.1239422877772402No Hit
AGAGAAGTGCGACGGTCGGAAGCGACGGGCCCGAGACCGCGGTCCATTCA220930.11869855493790663No Hit
GCACTTGCCACCCACGAGGAGTGGCAATATCCGTGTTCCGGTTCGGGAAT220280.11834933092709035No Hit
GACGAGAGTTAAGTCCAGAACGTGGACCTTGCGGTCCGCTTCCACTTCAT217850.11704377039434644No Hit
CGCCAACGTCCTTAGCACATGGTACGAGATCACCACCCCAACGACCGGCA217280.11673752780024603No Hit
GCAATGATCTATCCCCAGCACGACGATGTTTAAAAGATTACCCACACCTC214120.11503976183996997No Hit
AGAGGCCGTTTCACCCAGGCTCGCGCCAAAGGCTGCGTCACGACCACTGC207600.11153677637762828No Hit
AAGTTCGTTGTTCGTTGCCTCCCGATTTGACCTCGCGGCCATAGCTGGGC205950.11065028465786389No Hit
CATTAGAGTTTGGTATTGGCAGTGCCTTGGGAGTTTTTGTCTCCCTTGGC205140.11021509781361592No Hit
TACTAAGGTTCCAGAAACCAACAAAATAGAACCAAAGTCCTATTCCATTA205120.11020435245943695No Hit
AACATTAGAGTTTGGTATTGGCAGTGCCTTGGGAGTTTTTGTCTCCCTTG204320.10977453829227847No Hit
CTATTCTTGTTCGCCTAAGGTTATCTGGAGGTAATTATCGTTGCTTTCTA200920.10794782808185488No Hit
GGACGTAATCAGCGCGAGCTGATGACTCGCGCTTACTAGGAATTCCTCGT199360.10710969045589583No Hit
CCCACACCTCTCGGTGAAGGAGACACTCTCTGACATCGTCAGTGTAGCGC198310.10654555936150031No Hit
AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATT195080.1048101846615979No Hit
CTTCTATTCTTGTTCGCCTAAGGTTATCTGGAGGTAATTATCGTTGCTTT193320.10386459349384922No Hit
GGGAAACTTCGGAGGGAACCAGCTACTAGACAGTTCGATTAGTCTTTCGC191090.10266648650289494No Hit
GATCACCACCCCAACGACCGGCAGCAGTCGCAGAGCACTGCAAGCAGTCC188200.10111378282403488No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)