FastQCFastQC Report
Mon 7 Oct 2024
68--1D9_R2_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename68--1D9_R2_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22625726
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length51-130
%GC42

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1046120.462358644314883No Hit
ACTGGACGGGAAGTTCGAAAGAGCGAAGAAGAGGCTTTAAACTCGTTTTT396420.17520763753613916No Hit
CCCCCGAAGAGCATCACCCCAACCCCAAAGCAACGCCGTTGCCTGGCACC274040.12111876542657682No Hit
GAAGAGCTGATGCTCGCCCTCCCGTCCCAGGAGGATGGCCTGGCTGATGA263980.11667249926035524No Hit
AACTGGACGGGAAGTTCGAAAGAGCGAAGAAGAGGCTTTAAACTCGTTTT227980.10076140761184857No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)