FastQCFastQC Report
Mon 7 Oct 2024
5--1E1_R2_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename5--1E1_R2_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21325639
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length51-130
%GC40

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1003990.47079011325287834No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT454180.2129736886196001No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)