FastQCFastQC Report
Mon 7 Oct 2024
102--2F1_R2_001.fastp-trim.fq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename102--2F1_R2_001.fastp-trim.fq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29460781
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length51-130
%GC42

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1200420.40746373967479No Hit
ACTGGACGGGAAGTTCGAAAGAGCGAAGAAGAGGCTTTAAACTCGTTTTT563690.19133572867603205No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT326830.1109373169706533No Hit
AACTGGACGGGAAGTTCGAAAGAGCGAAGAAGAGGCTTTAAACTCGTTTT307750.1044609102521756No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)