Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4458.ps
Locus Name: Cluster_4458
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:3
AGGGAGAAUAUUGUCUGGCAaA............................................................................ len:22 al:2
AGGGAGAAUAUUGUCUGGCAa............................................................................. len:21 al:2
.GGGAGAAUAUUGUCUGGC............................................................................... len:18 al:1
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:1
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:6
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:8
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:3
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:6
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:6
...GAGAAUAUUGUCUGGCAaA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:1
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:3
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:1
........UAUUGUCUGGCAUAAGGUGAGCa................................................................... len:23 al:1
..............CUGGCAUAAGGUGAGCUGUGuGA............................................................. len:23 al:1
....................cAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:7
......................AGGUGAGCUGUGGGAACUaUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:15
......................AGGUGAGCUGUGGGAACUCgUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:73
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:5
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:2
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:2
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:4
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:2
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:15
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUuUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2477
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:16
......................AaGUGAGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:16
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:27
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:11
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGUGGGgACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:19
......................AGGUGAGCUGUuGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:18
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:2
......................AGGUGAGCcGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:1
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:1
......................AGGgGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAACgCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:1
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:35
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCcUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:7
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:9
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:9
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:29
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:18
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:31
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGuUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:5
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:7
......................AcGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:2
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:16
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:4
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:60
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:14
......................AGGUGAGCUGUGGGAACUCUUAaUAUUU................................................ len:28 al:1
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:68
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:10
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:4
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:7
......................AGGUaAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:49
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:5
......................AGGUGAGCUGgGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:46
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:10
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:9
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:5
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:7
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:3
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:1
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:2
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:497
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:10
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:3
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:1
.......................uGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:21
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:3
.......................GGUGAGCUGUGGGAACUa......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:3
.......................GGUGAGCcGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:2
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCa........................................................ len:19 al:1
........................GUGAGCUGUGGGAACUCUa....................................................... len:19 al:1
........................uUGAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:7
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:1
.........................UGAGCUGUGGGAACUCcUAUUA................................................... len:22 al:1
.........................UGAGCUGUGGGgACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:5
...........................AGCUGUGGGAACUCUUuU..................................................... len:18 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:2
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:1
............................................UUAUUUAUGAUAUCAGUUCCACa............................... len:23 al:1
.......................................................cUCAGUUCCACCAGCUCACCAAU.................... len:23 al:1
........................................................UCAGUUCCACCAGCgCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:10
........................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCaCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCgGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAa.................. len:24 al:1
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAc.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:16
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:2
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:3
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:70
........................................................UCgGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCgCCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:14
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:35
........................................................UCAGUUCCACCAGCUCAgCAA..................... len:21 al:2
........................................................UCAGUUCCACCAGCUCACCAAgA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:309
........................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCgGCUCACCAAU.................... len:22 al:1
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:2
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAAUAUu................. len:25 al:2
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:11
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:336
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:4
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:113
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:2
........................................................UCAGUUCCACuAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:28
........................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:10
........................................................UCAGUUCCAuCAGCUCACCAAUA................... len:23 al:1
........................................................aCAGUUCCACCAGCUCACC....................... len:19 al:1
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:17
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:10
........................................................UCAGUUCCACCAGCUCACCAAaA................... len:23 al:3
........................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAg..................... len:21 al:3
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:19
........................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:4
........................................................UCAGUUCCACCgGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUC.......................... len:16 al:1
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:6
........................................................UCAGUUCCACCAuCUCACCA...................... len:20 al:3
........................................................cCAGUUCCACCAGCUCACC....................... len:19 al:1
........................................................UCAGUUCCACCAGCUuACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAcCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCcCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:14
........................................................aCAGUUCCACCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAGCUCACCAu..................... len:21 al:1
........................................................UuAGUUCCACCAGCUCACCAAUAU.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:44
........................................................UCAGUUCCACCAuCUCACC....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:11
........................................................UCgGUUCCACCAGCUCACCAAUAU.................. len:24 al:1
.........................................................CAGUUCCACCAGCUCACCAAUu................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:1
............................................................UUCCACCAGCUCACCAAU.................... len:18 al:4
............................................................UUCCACCAGCUCACCAAa.................... len:18 al:1
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:5