Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:10129512-10129606 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2.1-Pmea-sRNAseq-ShortStack-31bp-fastp-merged-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_1286.ps
Locus Name: Cluster_1286
UUGCUGUUUCAGCUGUAUAUCGAUGUACUUCAGAGCAAUUUUUUUUACAAAAAUUGCUCCGAAAUACAUCUAUGUAACGUUGAAAAUUUAUUGUA
......(((((((..(((((.((((((.(((.(((((((((((.....))))))))))).))).)))))).)))))..))))))).......... (-31.20)
........UCAGCUGUAUAUCGAcGUAC................................................................... len:20 al:1
...................cCGAUGUACUUCAGAGCAAUUUUU.................................................... len:24 al:1
....................CGAUGUACcUCAGAGCAAUUUUU.................................................... len:23 al:6
....................CGAUGUACUUCAGAGCAAUUUUUUUU................................................. len:26 al:1
....................CGAUGUACUUCAGAGCAAUgUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAgUUUUU.................................................... len:23 al:5
....................CGAUGUACUUCAGAGCAAUUc...................................................... len:21 al:7
....................CGAUGUACUUCAGAGCAAU........................................................ len:19 al:24
....................CGAUGUACUUCAGAGCAAUUUUaU................................................... len:24 al:5
....................CGAUGUACUUCcGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCgGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCAAcUUUU.................................................... len:23 al:3
....................CGAUGUACgUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUuAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUACUUCAGAGCAAUUcUU.................................................... len:23 al:4
....................CGAUGUACUUCAGAGCAAgU....................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUUUUgU................................................... len:24 al:13
....................CGAUGUACUUCAGgGCAAUUUUUU................................................... len:24 al:11
....................CGAUGUACUUCAGAaCAAUUUUU.................................................... len:23 al:3
....................CGAUGUACcUCAGAGCAAUUUUUU................................................... len:24 al:5
....................CGAUGUAaUUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCgAU........................................................ len:19 al:1
....................CGAUaUACUUCAGAGCAAUUUUU.................................................... len:23 al:3
....................CGAUGUACUUCAGAGuAAUUUUUU................................................... len:24 al:2
....................CGAUGUACUUCgGAGCAAUUUUUUU.................................................. len:25 al:1
....................CGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1118
....................CGAUGUACUUCAGAGCAAUUUUa.................................................... len:23 al:39
....................CGAUGUACUUCAGAGCAAUUgU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCA.......................................................... len:17 al:1
....................CGAUGUACUUCAGAGCgAUU....................................................... len:20 al:1
....................CGAUGUgCUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUUUUUUACAAA............................................ len:31 al:2
....................CGAUGUACUUCAGAGCAAUUUUUaU.................................................. len:25 al:44
....................CGgUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUU..................................................... len:22 al:123
....................CGAUGUACUUaAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUaU.................................................... len:23 al:3
....................CaAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:14
....................CGAUGUACUUCAGAGaAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAAUUgUUU................................................... len:24 al:1
....................CGgUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:15
....................CGAUGUACcUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUUcU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUg................................................... len:24 al:2
....................CuAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUcCAGAGCAAUUUUU.................................................... len:23 al:5
....................CGAUGUACUUCAGAGCAAUUU...................................................... len:21 al:44
....................CGAUGUACUUCAGAGCAAUg....................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUUUUg.................................................... len:23 al:6
....................uGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:22
....................CGAUGUACUUCAGAGCAAUUUUc.................................................... len:23 al:308
....................CuAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:2
....................CaAUGUACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCgAUUUUU.................................................... len:23 al:5
....................CGAUGUACUUCAGAGCAAUUUUgUU.................................................. len:25 al:1
....................CGAUGUgCUUCAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAgGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGcACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUg...................................................... len:21 al:2
....................CGAUGUACUUCAGAGCAAUUUUUUUa................................................. len:26 al:1
....................gGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCgAUUU...................................................... len:21 al:1
....................aGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAcUUUUU................................................... len:24 al:4
....................CGAUGUACUUCAGAGCAgUUUUUU................................................... len:24 al:2
....................CGAcGUACUUCAGAGCAAUUUUU.................................................... len:23 al:12
....................uGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:3
....................CGAaGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGuUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCuAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:2869
....................CGAUGUACUUCAGuGCAAUUUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAuUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUUUgU.................................................. len:25 al:2
....................gGAUGUACUUCAGAGCAAU........................................................ len:19 al:1
....................CGAUGUACUUCAGAGCAAUUUUUa................................................... len:24 al:356
....................CGAUGUACUUCAGuGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUcU.................................................... len:23 al:3
....................CGAUGUACUUCAGAGCAAUUUgU.................................................... len:23 al:62
....................CGAUGUACUUCAGAGCgAUUUUUU................................................... len:24 al:2
....................gGAUGUACUUCAGAGCAAUU....................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUcUUU.................................................... len:23 al:2
....................aGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:7
....................CGAUGUACUUCAGAGCAAUc....................................................... len:20 al:11
....................CaAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:19
....................CGAUGUACUUCAGAGCAAUUUUUUa.................................................. len:25 al:13
....................CGAUGUACUUCAGAGCAAc........................................................ len:19 al:1
....................CGAUGUACUcCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGgGCAAUUUUU.................................................... len:23 al:14
....................CGAUGUACUUCAGAGCAAUU....................................................... len:20 al:94
....................CGAUGUACUUCAGAGCAAUUUUUUUUACA.............................................. len:29 al:1
....................CGAUGUACUUCAGAGCAAUcUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUcUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUa....................................................... len:20 al:2
....................CGAUGUACUaCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAuUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUa..................................................... len:22 al:3
....................CGgUGUACUUCAGAGCAAUU....................................................... len:20 al:1
....................CGAcGUACUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCgGAGCAAUUUUU.................................................... len:23 al:7
....................CGAUGcACUUCAGAGCAAUUUUU.................................................... len:23 al:6
....................CGAUGUACUUCAGAGCAAUUUc..................................................... len:22 al:11
....................CGgUGUACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................gGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUACUUCAGAGCAAUUUUUc................................................... len:24 al:128
....................CGAUGUACUUCAGAGCAAUUgUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAA......................................................... len:18 al:5
....................CGgUGUACUUCAGAGCAAUUU...................................................... len:21 al:2
....................CGAUGUACUUCAGAGCAAUUUUUUaU................................................. len:26 al:4
....................CGAUGUACUUCAGAGCAAUUUUUUU.................................................. len:25 al:47
....................CGAUGUACUUCAGAGCAAUUUUUUc.................................................. len:25 al:2
.....................GAUGUACUUCAGAGCAAUUUUUUa.................................................. len:24 al:1
.....................GAUGUACUUCAGAGCAAUc....................................................... len:19 al:1
.....................GAUGUACUUCAGAGCAAUUUUU.................................................... len:22 al:8
.....................GAUGUACUUCAGAGCAAUUUUUc................................................... len:23 al:2
.....................GAcGUACUUCAGAGCAAUUUUUU................................................... len:23 al:2
.....................GAUGUACUUCAGAGCAAUUU...................................................... len:20 al:1
..................................................AcAUUGCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACgUC......................... len:20 al:2
..................................................AAAUUGCUCCGAAAUACgUCUAU...................... len:23 al:10
..................................................gAAUUGCUCCGAAAUACAUCU........................ len:21 al:12
..................................................AAAUUGCUuCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAa...................... len:23 al:46
..................................................AAAUUGCUCCGgAAUACAUCU........................ len:21 al:8
..................................................AgAUUGCUCCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAgAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUcU...................... len:23 al:2
..................................................AAAUUGCUCuGAAAUACAUCU........................ len:21 al:3
..................................................AAAUUGCaCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGaUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGuUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUAaAUCUAU...................... len:23 al:1
..................................................AAAgUGCUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUAuAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAUu..................... len:24 al:40
..................................................AAAcUGCUCCGAAAUACAUCUAU...................... len:23 al:6
..................................................uAAUUGCUCCGAAAUACAUCU........................ len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUCa........................ len:21 al:742
..................................................AAAUUGCUCCGAAAUACAaCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCc........................ len:21 al:537
..................................................AAcUUGCUCCGAAAUACAUCU........................ len:21 al:40
..................................................AAAUcGCUCCGAAAUACAUCU........................ len:21 al:5
..................................................uAAUUGCUCCGAAAUACAUCUA....................... len:22 al:1
..................................................AAcUUGCUCCGAAAUACAUCUA....................... len:22 al:4
..................................................AAgUUGCUCCGAAAUACAUCUAU...................... len:23 al:3
..................................................AAAUUGCUCCGAAgUACAUCUAU...................... len:23 al:6
..................................................AAAUUGCUCCGAAAcACAUCU........................ len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:1134
..................................................AAAUUGCUCCGAAAUACAUaU........................ len:21 al:8
..................................................AAAUaGCUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAcUUGCUCCGAAAUACAUCUAU...................... len:23 al:29
..................................................AAAUUGCUCuGAAAUACAUCUAU...................... len:23 al:3
..................................................AAAUUGCUCCGAAAUAuAUCU........................ len:21 al:2
..................................................cAAUUGCUCCGAAAUACAUCU........................ len:21 al:19
..................................................AcAUUGCUCCGAAAUACAUCU........................ len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUCcAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAcCUAU...................... len:23 al:4
..................................................AAAUUGCUCCGAAAUACAUCUAcG..................... len:24 al:2
..................................................AAAUUGCUCCGAAAUACAc.......................... len:19 al:1
..................................................AAAUUGCUCCGAAAUACg........................... len:18 al:1
..................................................AAAUUGCUCCGAAAUACAa.......................... len:19 al:1
..................................................AAAUUGCUCCGAAAUgCAUCU........................ len:21 al:3
..................................................AAAaUGCUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCg........................ len:21 al:195
..................................................AAAUUGCUCCGAAAUACAUCUAg...................... len:23 al:27
..................................................AAAUUGCUCCGAAAUACA........................... len:18 al:5
..................................................AAuUUGCUCCGAAAUACAUCU........................ len:21 al:2
..................................................AAAUUGCUCCGAAAUACAU.......................... len:19 al:5
..................................................AAAUcGCUCCGAAAUACAUCUAU...................... len:23 al:3
..................................................uAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AcAUUGCUCCGAAAUACAUCUA....................... len:22 al:1
..................................................AAgUUGCUCCGAAAUACAUCU........................ len:21 al:9
..................................................AAAUUGCcCCGAAAUACAUCUAU...................... len:23 al:3
..................................................gAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:5
..................................................cAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:6
..................................................AAAUUGCUCCGAAAUgCAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAc...................... len:23 al:198
..................................................AAAUUGCUCCGAAAUACAUC......................... len:20 al:6
..................................................AAAUUaCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAgUACAUCUA....................... len:22 al:1
..................................................AgAUUGCUCCGAAAUACAUCU........................ len:21 al:11
..................................................AAAUUGCUCCGAAAUuCAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAUCU........................ len:21 al:2021
..................................................AAAUUGCUCCGAAAUACAcCU........................ len:21 al:5
..................................................AAAUUGCUCCGAAAUACAUCUA....................... len:22 al:75
..................................................AAAUUGuUCCGAAAUACAUCU........................ len:21 al:3
..................................................AAAUUGCUCCGAAAUACAUCUAUa..................... len:24 al:11
..................................................AAAUUGCUCCGAAAUACAUCUgU...................... len:23 al:21
..................................................AAAcUGCUCCGAAAUACAUCU........................ len:21 al:5
..................................................AAAUUGCUCCGAAAUACAUuU........................ len:21 al:3
..................................................AAAUUGCUCCGAAAUACAgCU........................ len:21 al:3
..................................................AAAUUGCUCCGgAAUACAUCUAU...................... len:23 al:4
..................................................AAAUUGCUCCGAAAUACcUCU........................ len:21 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAUc..................... len:24 al:8
..................................................AAAUUGgUCCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAgUACAUCU........................ len:21 al:1
..................................................AuAUUGCUCCGAAAUACAUCU........................ len:21 al:2
..................................................AAAUUGCUaCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAcACAUCUAU...................... len:23 al:8
..................................................AAAUUGCUCCGuAAUACAUCUAU...................... len:23 al:3
..................................................AAAUUGCcCCGAAAUACAUCU........................ len:21 al:9
..................................................AAAUUGCUCCGAAAUACAUa......................... len:20 al:1
..................................................AAAUUGCUCCGAAAUACgUCU........................ len:21 al:14
..................................................AAAUUuCUCCGAAAUACAUCUAU...................... len:23 al:1
...................................................AAaUGCUCCGAAAUACAUCU........................ len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCUAU...................... len:22 al:2
...................................................AAUUGCUCCGAAAUACAUCU........................ len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCc........................ len:20 al:3
...................................................AAUUGCUCCGAAAUACgUCU........................ len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCUAc...................... len:22 al:3
....................................................AUUGCUCCGAAAUACAUCa........................ len:19 al:9
....................................................AUUGCUCCGAAAUACAUCU........................ len:19 al:16
....................................................AUUGCUCCGAAAUACAUCUAU...................... len:21 al:9
....................................................AUUGCUCCGAAAUACAUCUAc...................... len:21 al:2
....................................................AUUGCUCCGAAAUACAUCc........................ len:19 al:5
.....................................................UUGCUCCGAAAUACAUCUAa...................... len:20 al:3
.....................................................UUGCUCCGAAAUACAUCa........................ len:18 al:34
.....................................................aUGCUCCGAAAUACAUCUAU...................... len:20 al:1
.....................................................UcGCUCCGAAAUACAUCUAU...................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUuU........................ len:18 al:1
.....................................................UUGCUCCGAAAUACAUCUA....................... len:19 al:1
.....................................................UUGCUCCGAAAUACAUCc........................ len:18 al:21
.....................................................UUGCUCCGAAAUACAUCUAU...................... len:20 al:29
.....................................................UUGCUCCGAAAUACAUCUAUc..................... len:21 al:1
.....................................................UUGCUCCGAAAUACAUCUAc...................... len:20 al:2
.....................................................UcGCUCCGAAAUACAUCU........................ len:18 al:1
.....................................................UUGCUCCGAAAUACAUgU........................ len:18 al:1
.....................................................UUGCUCCGAAAUACAUCU........................ len:18 al:83
.....................................................UUGCUCCGAAAUACAUCUAUu..................... len:21 al:2
.....................................................UUGCUCCGAAAUACAUCg........................ len:18 al:12
......................................................UGCUCCGAAAUACAUCUAU...................... len:19 al:1