Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000024:4808666-4808760 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_5639.ps
Locus Name: Cluster_5639
UUUGUACUUACCCCUGCCGUCCAGAACCCAAGAAUCUCGAAGGUUUUUAAAACCUUCAAGGUUCUGGGGUUAUACGGCUUGGGUACAAACACUCU
..(((...(((((..(((((....(((((.(((((((.((((((((...)))))))).))))))).)))))..)))))..)))))...))).... (-42.70)
.UUGUACUUACCCCUGCCGUCC......................................................................... len:21 al:1
.....................CAGAACCCAAGAAUCcCGAAGG.................................................... len:22 al:1
.....................CAGAACCCAAGAAUCUCGAA...................................................... len:20 al:2
.....................CAGAACCCAAGAAUCUCGAAGG.................................................... len:22 al:1
.....................CAGAACCCAAGAAUCUCGg....................................................... len:19 al:1
.....................CAGAACCCAAGAAUCUCGA....................................................... len:19 al:4
.....................CAGAACCCAAGAAUCUCGAAG..................................................... len:21 al:3
.....................CAGAACCCAAGAAUCUCGAAGu.................................................... len:22 al:1
......................AGAACCCAAGgAUCUCGAA...................................................... len:19 al:2
......................AGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:169
......................AGAACCCAAGAAUCUCGAAGGU................................................... len:22 al:5
......................AGAACCCAAGAAUCUCGAAGGUUa................................................. len:24 al:1
......................AGAACCCAAGAAUCcCGA....................................................... len:18 al:5
......................AGAACCCAAGAAUCUCGAcGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAAGaU................................................... len:22 al:1
......................AGgACCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCcCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAcCUCGAAG..................................................... len:20 al:5
......................AGAACCCAAGAAUCUCGAuG..................................................... len:20 al:1
......................AGAACCCgAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGA....................................................... len:18 al:894
......................AGAACCCAAGAAUCUCGAAG..................................................... len:20 al:823
......................gGAACCCAAGAAUCUCGAA...................................................... len:19 al:10
......................AGAACCCuAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCuAGAAUCUCGA....................................................... len:18 al:1
......................AGAACuCAAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUaGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAAa..................................................... len:20 al:105
......................gGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AaAACCCAAGAAUCUCGAAGG.................................................... len:21 al:2
......................AGAACCCAAGAAUCUaGAAG..................................................... len:20 al:1
......................AGAACCCAAGAAUCUCGAAGGg................................................... len:22 al:1
......................AGAACCCAgGAAUCUCGAA...................................................... len:19 al:2
......................AGAuCCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................AGAACCCAAGAgUCUCGA....................................................... len:18 al:1
......................AcAACCCAAGAAUCUCGAAG..................................................... len:20 al:2
......................AGAACCuAAGAAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCgCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGAA...................................................... len:19 al:575
......................AGAACCCgAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCcCGAAGG.................................................... len:21 al:4
......................AGAACCCAAGAAUCUCGAAc..................................................... len:20 al:24
......................AGAACCCAAGAAUCUCGc....................................................... len:18 al:3
......................AGAACCCAAGAgUCUCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCUCGAg...................................................... len:19 al:14
......................AGAgCCCAAGAAUCUCGA....................................................... len:18 al:4
......................AGAACCCAAGAAUCUCGAc...................................................... len:19 al:2
......................AGAACCCAAGAAUaUCGA....................................................... len:18 al:1
......................AGAACCCAAGAcUCUCGA....................................................... len:18 al:1
......................AGAACCCuAGAAUCUCGAAG..................................................... len:20 al:3
......................AaAACCCAAGAAUCUCGAA...................................................... len:19 al:5
......................AGAAuCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................cGAACCCAAGAAUCUCGA....................................................... len:18 al:13
......................AcAACCCAAGAAUCUCGAAGG.................................................... len:21 al:3
......................AGAACCCAAGAAUCcCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGAAGa.................................................... len:21 al:77
......................uGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:2
......................AGAACCCAAGAAUCUCGAcG..................................................... len:20 al:15
......................AGAACCCAAGAAUCUCGu....................................................... len:18 al:29
......................AGAACCCAAGAAUCUCGAAGuUU.................................................. len:23 al:2
......................AGAACCCAAGAAUCUCaAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCcA....................................................... len:18 al:3
......................cGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:2
......................gGAACCCAAGAAUCUCGA....................................................... len:18 al:6
......................AGAACCCAAGAgUCUCGAA...................................................... len:19 al:3
......................AGAACCCAAaAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAaCUCG........................................................ len:17 al:1
......................AGAACCCAAGAAUCUCGAAGGc................................................... len:22 al:1
......................AGAACCCAAGAAUuUCGAAG..................................................... len:20 al:1
......................AGAACCCgAGAAUCUCGA....................................................... len:18 al:3
......................AGAACCCAAGAAUCUuGAA...................................................... len:19 al:1
......................AGAACCCAAGAAcCUCGA....................................................... len:18 al:3
......................AGAACCCAgGAAUCUCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCUCGAAGGa................................................... len:22 al:2
......................AGgACCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................cGAACCCAAGAAUCUCGAAG..................................................... len:20 al:6
......................AGAACCCAAGAAUCUCaA....................................................... len:18 al:16
......................AGuACCCAAGAAUCUCGAA...................................................... len:19 al:1
......................AGgACCCAAGAAUCUCGA....................................................... len:18 al:2
......................AGAgCCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAgGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGgA...................................................... len:19 al:3
......................AGAACCCgAGAAUCUCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCUuGA....................................................... len:18 al:1
......................AGAACCCAAaAAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUaUCGAA...................................................... len:19 al:1
......................AGAACCCAAGgAUCUCGAAGG.................................................... len:21 al:2
......................AGAACCCAAGAAUCUCGAgG..................................................... len:20 al:6
......................gGAACCCAAGAAUCUCGAAG..................................................... len:20 al:7
......................AGAACCCAAGAAUCUCGAAGaUU.................................................. len:23 al:1
......................AGAACCCAuGAAUCUCGAAG..................................................... len:20 al:1
......................AGAACuCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGuAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAAaG.................................................... len:21 al:1
......................cGAACCCAAGAAUCUCGAA...................................................... len:19 al:8
......................AGAACCCAAGAAUCUuGAAG..................................................... len:20 al:2
......................AGAACuCAAGAAUCUCGA....................................................... len:18 al:2
......................AGAACCCAAGAAUCUCGAAu..................................................... len:20 al:24
......................AGAuCCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGg....................................................... len:18 al:23
......................AGAACCCAAGAAUCUCGAAGGUUUa................................................ len:25 al:1
......................AGAACCCAAGAAUCUCGAu...................................................... len:19 al:30
......................AGgACCCAAGAAUCUCGAA...................................................... len:19 al:5
......................AGAACCCAAGgAUCUCGA....................................................... len:18 al:2
......................uGAACCCAAGAAUCUCGAAG..................................................... len:20 al:5
......................AaAACCCAAGAAUCUCGA....................................................... len:18 al:3
......................AGAACCuAAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGAAGc.................................................... len:21 al:2
......................AGAACCCAAGAAUCUCGAAGu.................................................... len:21 al:9
......................AGAACCCAgGAAUCUCGA....................................................... len:18 al:4
......................AGAACCCAAGgAUCUCGAAG..................................................... len:20 al:3
......................AuAACCCAAGAAUCUCGAA...................................................... len:19 al:3
.......................GAACCCAAGAAUCUCGAAa..................................................... len:19 al:3
.......................GAACCCAAGAAUCUCGAAc..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAA...................................................... len:18 al:3
.......................aAACCCAAGAAUCUCGAAG..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAAu..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAAG..................................................... len:19 al:11
.......................GAACCCAAGAAUCUCGAAGu.................................................... len:20 al:1
.......................GAACCCAAGAAUCcCGAAG..................................................... len:19 al:1
........................AACCCAAGAAUCUCGAAG..................................................... len:18 al:1
........................cACCCAAGAAUCUCGAAG..................................................... len:18 al:1
....................................................CCUUCAAGGUUCUGGGGUUAU...................... len:21 al:2
....................................................CCUUCAAGGUUCUGGGGUUAUc..................... len:22 al:1
....................................................CCUUCAAGGUUCUGGGGUa........................ len:19 al:1
....................................................CCUUCAAGGUUCUGGGGUUAUA..................... len:22 al:9
....................................................CCUUuAAGGUUCUGGGGUUAUA..................... len:22 al:1
......................................................UUCAAGGUUCUGGGGUUAUAu.................... len:21 al:5
......................................................UUCAAGGUUCUGGGGUUAUAC.................... len:21 al:4
......................................................cUCAAGGUUCUGGGGUUAU...................... len:19 al:1
......................................................UUCAAGGUUCUGGGGUUAUACu................... len:22 al:2
......................................................UUCAAGGUUCUGGGGUUgU...................... len:19 al:2
......................................................UUCAAGGUUCUGGGGUUAUu..................... len:20 al:1
......................................................UUCAAGGUUCUGGGGUUAUuC.................... len:21 al:1
......................................................UUCAAGGUUCUGGGGUUAUc..................... len:20 al:1
......................................................UUCAAGGUUCUGGGGUUAUA..................... len:20 al:19
......................................................UUCAAGGUUCUGGGGUUAU...................... len:19 al:19
......................................................UUCAAGGUUCUGGGGUUAc...................... len:19 al:2
.......................................................UCAAGGUUCUGGGGUUAUA..................... len:19 al:1
.......................................................UCAAGGUUCUGGGGUUAU...................... len:18 al:1
.......................................................UCAAGGUUCUGGGGUUAc...................... len:18 al:1
........................................................CAAGGUUCUGGGGUUAUA..................... len:18 al:1
........................................................CAAGGUUCUGGGGUUAUg..................... len:18 al:1
..........................................................................CGGCUUGGGUACAAACACUCU len:21 al:1