Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000017:5050908-5051000 minus Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_4591.ps Locus Name: Cluster_4591 AGGAGAAGUUAGAUGGAAUCAACUGCUGAGAUUCUAUGGAUUUAAUUUAAAUCCAUAGAACUUCUGCAUUUGAUUCCAAAUAACUCUAACCAU .(((((.((((..(((((((((.(((.(((.(((((((((((((...))))))))))))).))).))).)))))))))..)))))))..)).. (-40.60) AGGAGAAGUUAGAUGGAAUC......................................................................... len:20 al:1 .................AUCAACUGCUGAGAUUCUAUGGAUU................................................... len:25 al:2 ..................UCAACUaCUGAGAUUCUAUGGAUUU.................................................. len:25 al:1 ..................UCAACUGCUGAGAUUCUAU........................................................ len:19 al:1 ..................UCAACUGCUGAGAUUCUAUGGAUUU.................................................. len:25 al:5 ..................UCAACUGCUGAGAUUCUAUGGAUUc.................................................. len:25 al:1 ..................UCAACUGCUGAGAUUCUAUG....................................................... len:20 al:1 ..................aCAACUGCUGAGAUUCUAUGG...................................................... len:21 al:2 ..................UCAACUGCUGAGAUUCUAUGGAcUU.................................................. len:25 al:1 ...................CAACUGCUGAGAUUCUAUGGAUc................................................... len:23 al:1 ...................CAACUGCUGAGAUUCUAUGGAUUU.................................................. len:24 al:103 ...................CAACUGCUGAGAUUCUAUGGAUgU.................................................. len:24 al:6 ...................CgACUGCUGAGAUUCUAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCaGAGAUUCUAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUa....................................................... len:19 al:1 ...................CAACUGCUGAGAUUCUAUG....................................................... len:19 al:3 ...................CAACUGCUGAGAUcCUAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGGAaUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGGAUUUu................................................. len:25 al:3 ...................CAACUGCUGAGAUUCUAUGGAUUc.................................................. len:24 al:19 ...................CAACUGCUGgGAUUCUAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGGAUUUc................................................. len:25 al:1 ...................CAACUGCUGAGAUUCUAUGGAUU................................................... len:23 al:20 ...................CAACUGCUGAGAUUCUAUGGAUUa.................................................. len:24 al:5 ...................CAACUGCUGAGAUUCUAUGGAUUUA................................................. len:25 al:1 ...................CAACUGCUGAGAUUCUAUGGAU.................................................... len:22 al:2 ...................CAACUGCUGAGAUUCUAUGG...................................................... len:20 al:4 ...................uAACUGCUGAGAUUCUAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGa...................................................... len:20 al:4 ...................CAACUGCUGAGAUUCUAUGGAgU................................................... len:23 al:1 ...................CAACUGCUGAGAUUCUgUGGAUUUA................................................. len:25 al:1 ...................CAACUGCUGAGAUUCUAUGGAcUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGGgUU................................................... len:23 al:2 ...................CAACUGCUGAGAUUCcAUGGAUUU.................................................. len:24 al:1 ...................CAACUGCUGAGAUUCUAUGGAUaU.................................................. len:24 al:7 ....................AACUGCUuAGAUUCUAUGGAUU................................................... len:22 al:1 ....................AACUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:47680 ....................AACUGCUGAGAUUCUAUGu...................................................... len:19 al:114 ....................AACUGCUGAGAUUCUAUGuAUUU.................................................. len:23 al:3 ....................AACUGCUGAGAUUCUAUGGAgU................................................... len:22 al:152 ....................AACUGCUGAGgUUCUAUGGAUUUA................................................. len:24 al:6 ....................AACUGCUGAGAUUuUAUGGAUU................................................... len:22 al:9 ....................AACUGCUGAGAUUCUAaGGAUUU.................................................. len:23 al:11 ....................AACUGCUGAGAUcCUAUGGAU.................................................... len:21 al:1 ....................AcCUGCUGAGAUUCUAUGGAU.................................................... len:21 al:1 ....................AACUGCgGAGAUUCUAUGG...................................................... len:19 al:24 ....................AACUGCUGAGAUUCUgUGGAU.................................................... len:21 al:1 ....................AACUGCUGAaAUUCUAUGG...................................................... len:19 al:7 ....................AACUaCUGAGAUUCUAUGGAUUU.................................................. len:23 al:40 ....................AACUGCgGAGAUUCUAUGGAUUUA................................................. len:24 al:1 ....................AACUGCUGuGAUUCUAUGGAUU................................................... len:22 al:2 ....................AACUGCUGAGAUUCaAUGGAU.................................................... len:21 al:1 ....................AACUGCUGAGAUUCUAUGaA..................................................... len:20 al:2 ....................AACUGCUGAGAUUCUAcGG...................................................... len:19 al:10 ....................AACUGCUGAGAUcCUAUGGAUUU.................................................. len:23 al:121 ....................AACUGCUGAGAUUCUAUGGAUUUAA................................................ len:25 al:17 ....................AACUGCUGAuAUUCUAUGGAUUU.................................................. len:23 al:1 ....................AACgGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:6 ....................AACUGCUaAGAUUCUAUGGAUUU.................................................. len:23 al:25 ....................AACUGCUGAGAUUaUAUGGAUU................................................... len:22 al:2 ....................AgCUGCUGAGAUUCUAUG....................................................... len:18 al:3 ....................AACUGCUGAuAUUCUAUGG...................................................... len:19 al:1 ....................gACUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:296 ....................AACUGCUGAGuUUCUAUGGAU.................................................... len:21 al:1 ....................AuCUGCUGAGAUUCUAUGGAUU................................................... len:22 al:5 ....................AACcGCUGAGAUUCUAUGG...................................................... len:19 al:5 ....................AACUGCUGgGAUUCUAUGGAUUUA................................................. len:24 al:3 ....................AACUGCUGAGAUUCUAUGaAUUU.................................................. len:23 al:24 ....................uACUGCUGAGAUUCUAUGGA..................................................... len:20 al:1 ....................AACUGCUaAGAUUCUAUGG...................................................... len:19 al:1 ....................AACUGCUGAGAUUCUAUGGAUUg.................................................. len:23 al:839 ....................AACUGCUGAGAUUCUAUGGAUg................................................... len:22 al:194 ....................AACUGCUGAGAUUCUAUaGAUUUA................................................. len:24 al:1 ....................AgCUGCUGAGAUUCUAUGG...................................................... len:19 al:16 ....................AACUGCUGAGAUgCUAUGGAUUU.................................................. len:23 al:2 ....................AACUGCUGAGAUUCgAUGGAUUU.................................................. len:23 al:2 ....................AACcGCUGAGAUUCUAUGGAUU................................................... len:22 al:21 ....................AACUGCUGAGAUUCUAUGcAUUU.................................................. len:23 al:5 ....................AACUGCcGAGAUUCUAUGG...................................................... len:19 al:7 ....................AACUGCUGAGAUUCUAUGGAgUUA................................................. len:24 al:1 ....................AAaUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:1 ....................AACUGCUGAGAUUCUAgGGAUUU.................................................. len:23 al:5 ....................AACUGCUGAGAUUCUAcGGAUU................................................... len:22 al:14 ....................AACUGCUGAGAUUCUAUGGAUUUg................................................. len:24 al:22 ....................AcCUGCUGAGAUUCUAUGG...................................................... len:19 al:4 ....................AAuUGCUGAGAUUCUAUGGAUU................................................... len:22 al:2 ....................cACUGCUGAGAUUCUAUGGAUU................................................... len:22 al:88 ....................AACgGCUGAGAUUCUAUGGAUU................................................... len:22 al:2 ....................AACUGCUGAGAUUCUAcGGAUUU.................................................. len:23 al:94 ....................AACUGCUGAaAUUCUAUGGAUUU.................................................. len:23 al:12 ....................uACUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:3 ....................AuCUGCUGAGAUUCUAUGG...................................................... len:19 al:4 ....................AACUGCUGAGAUUuUAUGGA..................................................... len:20 al:1 ....................AACUGCUGAGAUUCUAUGaAUU................................................... len:22 al:5 ....................AACUGCgGAGAUUCUAUGGAU.................................................... len:21 al:19 ....................AACUGCUGAGAUUCUAUGGgUUU.................................................. len:23 al:153 ....................gACUGCUGAGAUUCUAUGG...................................................... len:19 al:10 ....................AACUGCUGAGAUUaUAUGGAUUU.................................................. len:23 al:3 ....................AACUGCUGAGcUUCUAUGGAUUU.................................................. len:23 al:8 ....................AACUGCUGAGAUUCaAUGG...................................................... len:19 al:1 ....................AgCUGCUGAGAUUCUAU........................................................ len:17 al:1 ....................AACUGCUGAGAUUCUAUGGAaU................................................... len:22 al:60 ....................AACUGCUGAGAcUCUAUGGAUUUA................................................. len:24 al:1 ....................AACUGCUGAGgUUCUAUGGA..................................................... len:20 al:2 ....................AACUGCUGAGAUUCUAUGcA..................................................... len:20 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUuA................................................ len:25 al:17 ....................AACUGCUGAGgUUCUAUG....................................................... len:18 al:2 ....................AACUGCUGAGAUUCUAUGGAUUc.................................................. len:23 al:8255 ....................AACUGCUGAGAUUCUgUGGAUU................................................... len:22 al:19 ....................AACUGCUGAGAgUCUAUGGAUU................................................... len:22 al:5 ....................AACaGCUGAGAUUCUAUGG...................................................... len:19 al:1 ....................AACUGCUGAGAaUCUAUGGAUUU.................................................. len:23 al:6 ....................AACUGCUGAGAUUuUAUGGAUUUAA................................................ len:25 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUAg................................................ len:25 al:5 ....................AACUGCaGAGAUUCUAUGGAUUU.................................................. len:23 al:37 ....................AgCUGCUGAGAUUCUAUGGA..................................................... len:20 al:1 ....................AACUGCUGgGAUUCUAUGGAUU................................................... len:22 al:17 ....................AACUGCUcAGAUUCUAUGGAUUU.................................................. len:23 al:1 ....................AACUGCUGAGAUUCUAc........................................................ len:17 al:5 ....................AACUGCUGAGAUUCUAUGGAUa................................................... len:22 al:391 ....................AACUGCUGgGAUUCUAUGGAUUU.................................................. len:23 al:189 ....................AACUGCgGAGAUUCUAUG....................................................... len:18 al:2 ....................AACUGCUGAGAUUuUAUGGAUUU.................................................. len:23 al:89 ....................uACUGCUGAGAUUCUAUGG...................................................... len:19 al:10 ....................AACUGCUGAGAUUuUAUG....................................................... len:18 al:1 ....................AACUGCUGAGAUUCUgUGG...................................................... len:19 al:7 ....................AACUGCUGAGAUUCUAUGG...................................................... len:19 al:2526 ....................AACUGgUGAGAUUCUAUGGAUU................................................... len:22 al:1 ....................cACUGCUGAGAUUCUAUGGA..................................................... len:20 al:2 ....................AACUGCUGAGAUUCUAUGGAUUUAuU............................................... len:26 al:17 ....................AACUGCUGAGAUUCUAUuGAUUU.................................................. len:23 al:8 ....................AACUGCUGAGAUUCUAUGGAaUU.................................................. len:23 al:13 ....................AACUGCUGAGAUUCUAUGGAUUUu................................................. len:24 al:741 ....................AACUGCUGAGAUUCUAUaGAU.................................................... len:21 al:3 ....................AACUGCUGAGAUUCUAcG....................................................... len:18 al:9 ....................AACUGCUGuGAUUCUAUGGAUUU.................................................. len:23 al:21 ....................AACUaCUGAGAUUCUAUGGAUU................................................... len:22 al:9 ....................AgCUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:5 ....................AACUGCUGAGAcUCUAUGGAUUU.................................................. len:23 al:116 ....................AACUGCUGAGAaUCUAUGG...................................................... len:19 al:1 ....................AACUGCUGAGAUUCUAgGG...................................................... len:19 al:10 ....................AACUGCUGAGAUcCUAUGG...................................................... len:19 al:2 ....................AACUGCUGAGAUUCUAUGGgU.................................................... len:21 al:15 ....................AACUGCUGAGAUUCcAUGGAUUU.................................................. len:23 al:95 ....................AACUGCUGAGAUUCUAUaGAUU................................................... len:22 al:3 ....................AACUGCUGAGAUUCUAUcG...................................................... len:19 al:3 ....................AACUGCUGAGuUUCUAUGGAUUU.................................................. len:23 al:1 ....................AACUGCUGuGAUUCUAUGGAU.................................................... len:21 al:1 ....................AACUGCUGAGAUUCUAUGGuU.................................................... len:21 al:1 ....................AACcGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:124 ....................AACUGCUGAGAUUCUAUGGu..................................................... len:20 al:8 ....................uACUGCUGAGAUUCUAUGGAU.................................................... len:21 al:2 ....................AACcGCUGAGAUUCUAUGGA..................................................... len:20 al:1 ....................AACUGCUGAGAUUCUgUGGAUUUA................................................. len:24 al:5 ....................AACUGCUGAGAUUCcAUGG...................................................... len:19 al:5 ....................AACUGaUGAGAUUCUAUGGAUUU.................................................. len:23 al:6 ....................AACUGCUGAGAUUCUAUGGAUUUAc................................................ len:25 al:23 ....................uACUGCUGAGAUUCUAUG....................................................... len:18 al:1 ....................AACUGCUGAGAUUCgAUGGAUU................................................... len:22 al:1 ....................AACUGCUGAGAUcCUAUG....................................................... len:18 al:2 ....................AACUGCUGAGAUUCUAUGGA..................................................... len:20 al:210 ....................AcCUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:161 ....................AACUGCUGAGAUUCUAUGGcUU................................................... len:22 al:118 ....................AACUGCUGAGAgUCUAU........................................................ len:17 al:3 ....................AACUGCUGuGAUUCUAUGG...................................................... len:19 al:1 ....................AACUGCUGAGAgUCUAUGGAUUU.................................................. len:23 al:4 ....................cACUGCUGAGAUUCUAUG....................................................... len:18 al:2 ....................AACUGCaGAGAUUCUAUGG...................................................... len:19 al:2 ....................AACUGCUGAGAUUCUAUGGAUcU.................................................. len:23 al:164 ....................AACUGCUGAGAUUCUcUGGAUUU.................................................. len:23 al:2 ....................AACUGCUGAGAUUCUAUGGAc.................................................... len:21 al:106 ....................AACcGCUGAGAUUCUAUGGAU.................................................... len:21 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUAAaU.............................................. len:27 al:2 ....................AACUGuUGAGAUUCUAUGGAUU................................................... len:22 al:9 ....................uACUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:144 ....................AAaUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:3 ....................AACUGCUGAGAUUCUAUGGAUUa.................................................. len:23 al:2032 ....................AACUGCUGAGAUUCUAgGGAUU................................................... len:22 al:1 ....................AACUGCUGAGuUUCUAUGG...................................................... len:19 al:1 ....................gACUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:5 ....................gACUGCUGAGAUUCUAUGGAUU................................................... len:22 al:48 ....................AACUuCUGAGAUUCUAUGGAUUUAAU............................................... len:26 al:1 ....................AACUGCUGAGAUUCUAUGa...................................................... len:19 al:948 ....................AACUGCUGAGAUUCUAUGGAUUUuAU............................................... len:26 al:3 ....................AACUGCcGAGAUUCUAUGGAUU................................................... len:22 al:22 ....................AACcGCUGAGAUUCUAUG....................................................... len:18 al:1 ....................AACUaCUGAGAUUCUAUGG...................................................... len:19 al:2 ....................AACUGCUGAGAUUuUAUGG...................................................... len:19 al:8 ....................AACUGCUGAaAUUCUAUGGAUU................................................... len:22 al:5 ....................cACUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:9 ....................AgCUGCUGAGAUUCUAUGGAUU................................................... len:22 al:33 ....................uACUGCUGAGAUUCUAUGGAUU................................................... len:22 al:14 ....................AuCUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:40 ....................AACUGCUGAGAcUCUAUGGAUU................................................... len:22 al:18 ....................AACUGCUGAGAUUCUgUGGA..................................................... len:20 al:1 ....................AACUGCUGAGAUcCUAUGGAUU................................................... len:22 al:17 ....................AACUGuUGAGAUUCUAUGGAUUU.................................................. len:23 al:43 ....................gACUGCUGAGAUUCUAUGGAU.................................................... len:21 al:2 ....................AACUGCUaAGAUUCUAUGGAUU................................................... len:22 al:1 ....................AACUuCUGAGAUUCUAUGG...................................................... len:19 al:3 ....................AACaGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:15 ....................AACUGCUuAGAUUCUAUGGAUUUA................................................. len:24 al:1 ....................gACUGCUGAGAUUCUAUG....................................................... len:18 al:2 ....................AACUGCUGcGAUUCUAUGGAUU................................................... len:22 al:2 ....................AACUGCUGAGAUUCUAUaGAUUU.................................................. len:23 al:64 ....................cACUGCUGAGAUUCUAUGGAU.................................................... len:21 al:3 ....................AACUGCUGAGAUUCUAUGc...................................................... len:19 al:36 ....................AACUuCUGAGAUUCUAUGGAUU................................................... len:22 al:10 ....................AACUGCcGAGAUUCUAUG....................................................... len:18 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUc................................................. len:24 al:108 ....................AACUGCUGuGAUUCUAUG....................................................... len:18 al:1 ....................AACUGCUGAGAUUCaAUGGAUU................................................... len:22 al:2 ....................AACUGCUGAGAUUCUAUGGAa.................................................... len:21 al:34 ....................AACUGuUGAGAUUCUAUGG...................................................... len:19 al:2 ....................AACUcCUGAGAUUCUAUGGAUUU.................................................. len:23 al:1 ....................AACUGCUGAGgUUCUAUGGAUUU.................................................. len:23 al:139 ....................AACUGCUGAGcUUCUAUGGAUU................................................... len:22 al:2 ....................AACUGCUGAGAcUCUAUGG...................................................... len:19 al:10 ....................AACUGCUGAGAUUCUAUGGAgUU.................................................. len:23 al:22 ....................AACUGCUGAGAUUCUAUa....................................................... len:18 al:30 ....................AgCUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:246 ....................AACUGCUGAGAUUCUAUGGuUUU.................................................. len:23 al:13 ....................AACUGCUGAGAUUCUAUuG...................................................... len:19 al:1 ....................AACUGCUGgGAUUCUAUGGAU.................................................... len:21 al:1 ....................AAuUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:43 ....................AcCUGCUGAGAUUCUAUGGAUU................................................... len:22 al:18 ....................AgCUGCUGAGAUUCUAUGGAU.................................................... len:21 al:5 ....................AACUGCUGgGAUUCUAUGG...................................................... len:19 al:8 ....................AACUGCUGAGAUUCUAUGcAUU................................................... len:22 al:1 ....................AACUGCUGAGAUUCUAUGGAg.................................................... len:21 al:39 ....................AACUGCUGAGAUUCUAUGGAUaU.................................................. len:23 al:416 ....................AACUGCUGAGAUUCUAcGGAUUUA................................................. len:24 al:4 ....................AuCUGCUGAGAUUCUAUGGAU.................................................... len:21 al:1 ....................AACUGCUGAGAUUCUAUu....................................................... len:18 al:2 ....................AACaGCUGAGAUUCUAUGGAUU................................................... len:22 al:3 ....................AACUGCUGAGAUUCUAUGGAUUUAAc............................................... len:26 al:4 ....................AACUGCUGAGAUUCUAU........................................................ len:17 al:31 ....................AACUGCUGAGAUUCUAUGGgUU................................................... len:22 al:24 ....................AACUGCUGAGgUUCUAUGGAUU................................................... len:22 al:30 ....................AACUuCUGAGAUUCUAUGGAUUU.................................................. len:23 al:110 ....................AACUGCUGAGAUaCUAUGGAUUU.................................................. len:23 al:10 ....................AACUGCUGAGAUUCUAgGGA..................................................... len:20 al:2 ....................AACUGCUGAGAUUCUAUGGuUU................................................... len:22 al:4 ....................AACcGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:4 ....................AACUGCUGAGAUUCUAgG....................................................... len:18 al:13 ....................cACUGCUGAGAUUCUAUGGAUUU.................................................. len:23 al:510 ....................AACUGCUGAGgUUCUAUGG...................................................... len:19 al:6 ....................AACUGCUGAGAUUCaAUGGAUUU.................................................. len:23 al:10 ....................AACUGCUGAGAUUCUAUGGAUUUAAa............................................... len:26 al:1 ....................AACUGCUGcGAUUCUAUGGAUUU.................................................. len:23 al:11 ....................AACUGCgGAGAUUCUAUGGAUUU.................................................. len:23 al:66 ....................AACUGCUGAGAUUCUAUGGg..................................................... len:20 al:22 ....................AACUGCUGAGAUUCUAUGGAU.................................................... len:21 al:519 ....................AACUGCUGAGAUUuUAUGGAUUUA................................................. len:24 al:36 ....................AACUGCUGAGAUUCUAUaG...................................................... len:19 al:34 ....................AACUGCUGAGAUUCUAUGGcUUU.................................................. len:23 al:4 ....................AACUGCUGAGAaUCUAUGGAUU................................................... len:22 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUAAU............................................... len:26 al:26 ....................AACUGCUGAGAUUCUAUG....................................................... len:18 al:202 ....................AACUGCUGAGAUUCUAUGGAUUUAu................................................ len:25 al:90 ....................AACUGCUGAGAUUCUAUGGAUUUgAU............................................... len:26 al:1 ....................AACUGCUGAGAUaCUAUGG...................................................... len:19 al:1 ....................AACUGCUGAGAUUCUAUGGAUc................................................... len:22 al:1446 ....................AACUGCUGAGgUUCUAUGGAU.................................................... len:21 al:1 ....................AAgUGCUGAGAUUCUAUGGAUU................................................... len:22 al:1 ....................AcCUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:3 ....................AACUGCUGAGAUUCUAUGGAUgU.................................................. len:23 al:863 ....................AACUGCUGAGAUUCUAUGGgUUUA................................................. len:24 al:6 ....................AACUGCgGAGAUUCUAUGGAUU................................................... len:22 al:114 ....................AACUGCUGAGAUUCUAUGGAUUaA................................................. len:24 al:4 ....................AACUGCUGAGAUUCUAUGGAUU................................................... len:22 al:7515 ....................AACUGCcGAGAUUCUAUGGAUUU.................................................. len:23 al:129 ....................AACUGCUuAGAUUCUAUGGAUUU.................................................. len:23 al:3 ....................AACUGCUGAGAUUCUAUGGAUUcA................................................. len:24 al:2 ....................AACUGCUGAGAUUCUAUGGAcU................................................... len:22 al:61 ....................AACUGCUGAGAUUCcAUGGAUU................................................... len:22 al:11 ....................AACUGCUGAGAUUCUAcGGAU.................................................... len:21 al:4 ....................cACUGCUGAGAUUCUAUGG...................................................... len:19 al:23 ....................AACUGCcGAGAUUCUAUGGAU.................................................... len:21 al:3 ....................AACUGCUGAGAUUCUgUGGAUUU.................................................. len:23 al:111 ....................AACUGCUGAGAcUCUAUGGAU.................................................... len:21 al:1 ....................AACUGCUGAGAUUCUAUGGAUUUAAUU.............................................. len:27 al:5 ....................AACUGCUGAGAUUCUAUGGAcUU.................................................. len:23 al:74 ....................AACUGCaGAGAUUCUAUGGAUU................................................... len:22 al:4 ....................AACUGCUGAGAUUCcAUGGAUUUA................................................. len:24 al:2 ....................AACUGCUGAGAUUCUAUGGAUUUA................................................. len:24 al:923 .....................ACUGCUGAGAUUCUAUGGAUUUu................................................. len:23 al:4 .....................ACUGCUGAGAUUCUgUGGAUUU.................................................. len:22 al:1 .....................ACUGCUGAGAcUCUAUGGAUUU.................................................. len:22 al:1 .....................ACUGCUGAGAUUCUAUGGg..................................................... len:19 al:2 .....................ACUGCUGAGAUUCaAUGGAUUU.................................................. len:22 al:1 .....................ACUGCUGAGAUUCUAUGaAUUU.................................................. len:22 al:1 .....................ACUGCUGAGAUUCUAUGGAUUg.................................................. len:22 al:6 .....................gCUGCUGAGAUUCUAUGGAUUUA................................................. len:23 al:1 .....................ACUGCUGAGgUUCUAUGGAU.................................................... len:20 al:1 .....................ACaGCUGAGAUUCUAUGGAUUU.................................................. len:22 al:1 .....................AaUGCUGAGAUUCUAUGGAUUU.................................................. len:22 al:1 .....................AuUGCUGAGAUUCUAUGGAUUU.................................................. len:22 al:1 .....................ACUGCgGAGAUUCUAUGGAUU................................................... len:21 al:1 .....................ACUGCUGAGAUUCUAUGGAUU................................................... len:21 al:37 .....................ACUGCUGAGAUUCUAUGGAUgU.................................................. len:22 al:13 .....................ACUGCUGAGAUUCUAUGGAUg................................................... len:21 al:2 .....................ACUGCUGAGAUUCUAUGGAUUUA................................................. len:23 al:7 .....................ACUGCUGAGAUUCUAUGGAU.................................................... len:20 al:6 .....................ACUGCUGAGAUUCUAUGGAUUa.................................................. len:22 al:29 .....................ACUGCUGuGAUUCUAUGGAUUU.................................................. len:22 al:1 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