Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_4461.ps
Locus Name: Cluster_4461
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:3
AGGGAGAAUAUUGUCUGGCAa............................................................................. len:21 al:2
AGGGAGAAUAUUGUCUGGCAaA............................................................................ len:22 al:2
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:6
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:8
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:1
.GGGAGAAUAUUGUCUGGC............................................................................... len:18 al:1
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:6
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:3
...GAGAAUAUUGUCUGGCAaA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:6
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:3
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:1
..............CUGGCAUAAGGUGAGCUGUGuGA............................................................. len:23 al:1
....................cAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:8
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:18
......................AcGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGgGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGgACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:70
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:3
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:5
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:57
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:7
......................AGGUGAGCcGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:2
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGCUGUGGGAACUCUUAaUAUUU................................................ len:28 al:1
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2489
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:2
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:15
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:34
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:6
......................AGGUGAGCUGUuGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:14
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:1
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:10
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:4
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:10
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:10
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:15
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:71
......................AGGgGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:10
......................AGGUGAGCUuUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:2
......................AGGUaAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:5
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:47
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:9
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCgUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:4
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:1
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:28
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:499
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:7
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:5
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:28
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:15
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:7
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:5
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:9
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUCcUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:17
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:4
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:16
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:17
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:2
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:6
......................AGGUGAGCUGUGGGAACgCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:3
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:18
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:48
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:7
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:3
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:2
......................AGuUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:36
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:8
......................AaGUGAGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:1
.......................uGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:2
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCa........................................................ len:19 al:1
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:1
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:21
.......................GGUGAGCcGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUa......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:3
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:3
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:1
........................GUGAGCUGUGGGAACUCUa....................................................... len:19 al:1
........................uUGAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:7
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:5
.........................UGAGCUGUGGGAACUCcUAUUA................................................... len:22 al:1
.........................UGAGCUGUGGGgACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:1
...........................AGCUGUGGGAACUCUUuU..................................................... len:18 al:1
............................................UUAUUUAUGAUAUCAGUUCCACa............................... len:23 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:2
........................................................UCAGUUCCACCAGCUCAgCAA..................... len:21 al:4
........................................................UCAGUUCCACCAuCUCACCA...................... len:20 al:4
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:9
........................................................UCAaUUCCACCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGuUCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCAg..................... len:21 al:2
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:5
........................................................UCAGUUCCACCAGCUCACaAAUA................... len:23 al:1
........................................................UCAGaUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCAaCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:15
........................................................UCgGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UuAGUUCCACCAGCUCACCAAU.................... len:22 al:2
........................................................UCAaUUCCACCAGCUCACC....................... len:19 al:1
........................................................UCuGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:12
........................................................UCAGUUCCACCAGCUCACCAAUAa.................. len:24 al:2
........................................................UCAGUUCCgCCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACaA...................... len:20 al:2
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:4
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:69
........................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCAuCAAU.................... len:22 al:1
........................................................UCAGUUCCACuAGCUCACCAAU.................... len:22 al:1
........................................................cCAGUUCCACCAGCUCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCU........................... len:15 al:1
........................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:6
........................................................UCAGUUCCACCAGCUCgCCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:17
........................................................UCAGUUCCAuCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:307
........................................................UCAGUUCCACCAGCUCACCu...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAu..................... len:21 al:3
........................................................cCAGUUCCACCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:10
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:31
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:33
........................................................UCAaUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAgUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAAUAUc................. len:25 al:1
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:338
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:11
........................................................UCAGUUCCACuAGCUCACCAAUA................... len:23 al:1
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUuCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:6
........................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:2
........................................................UCgGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:106
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:42
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:3
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:15
........................................................UCAGUUCCACCAGCUaACCAAU.................... len:22 al:1
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:7
........................................................UCAGUUCCACCAcCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:3
........................................................UCAGUUCCACCAGCUCACCAAUAc.................. len:24 al:3
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:5
........................................................UCAGUUCCACCAGCUCACCgAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:16
........................................................UCAGUUCCACCAGCUuACCAAU.................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAUu................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAU.................... len:21 al:1
..........................................................AGUUCCACCAGCUCACCAAUu................... len:21 al:1
..........................................................AGUUCCACCAGCUCACCAAUA................... len:21 al:1
............................................................UUCCACCAGCUCACCAAUAU.................. len:20 al:1
............................................................UUCCACCAGCUCACCAAU.................... len:18 al:4
............................................................UUCCACCAGCUCACCAAa.................... len:18 al:2
............................................................UUCCACCAGCUCACCAAUu................... len:19 al:1
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:1