Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000012:6455183-6455276 plus Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_3668.ps Locus Name: Cluster_3668 UCUCCGUUUCUUAGGUGAGCGGUGAAAUACUCUGACGGAGUCAGCUUCAGUGCACUCCAUCAGAAUAUUUUGCGCUCGCUUAAAGAUUGAUCAG ..((.((((.(((((((((((.(((((((.(((((.(((((..((......))))))).))))).)))))))))))))))))))))).)).... (-37.60) ......................UGuAAUACUCUGACGGAGUCAG.................................................. len:22 al:1 ......................UGAAAUACUCUGAuGGAGUCAGC................................................. len:23 al:2 ......................UGAgAUACUCUGACGGAGU..................................................... len:19 al:2 ......................UGAAAUACUCUGACGGAGUCAGCg................................................ len:24 al:21 ......................UGAAAUACUCUGgCGGAGUCAG.................................................. len:22 al:1 ......................UGAAAUACUCUGACGGAGUCAGa................................................. len:23 al:81 ......................UGAAAUACUCUGACGGAGUCAGCUUCAGU........................................... len:29 al:1 ......................UGAAAUACUCUGACGGAa...................................................... len:18 al:1 ......................UGAAAUACUCgGACGGAGUCAGC................................................. len:23 al:1 ......................UGAAAUACUCUGACGGAGU..................................................... len:19 al:44 ......................UGAAgUACUCUGACGGAGUCAGC................................................. len:23 al:3 ......................UGAAAUACUCUGACGGAGUCAGCUUCAGUG.......................................... len:30 al:1 ......................UGgAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGAGUCAGCUa............................................... len:25 al:9 ......................UGAAAUACUCaGACGGAGUCAGC................................................. len:23 al:1 ......................UGAAAUACUCUGACGGAaU..................................................... len:19 al:1 ......................UGAAAUACUCUGACGGAGUCAaC................................................. len:23 al:31 ......................UGAAAUACUCUGACGGAGUCAGCaU............................................... len:25 al:2 ......................UGAAAUACUCUGACGGAGUCAGCa................................................ len:24 al:87 ......................UGAAAUACUCUGACGGAGUCAGCUU............................................... len:25 al:39 ......................UGAAAUACUCUGACGGAGaCAGC................................................. len:23 al:2 ......................UGgAAUACUCUGACGGAGUC.................................................... len:20 al:2 ......................UGAAAUACUCUGACGGAG...................................................... len:18 al:5 ......................cGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:9 ......................UGAAAUAuUCUGACGGAGUCAGC................................................. len:23 al:2 ......................UGAAAUACUuUGACGGAGUCAGC................................................. len:23 al:1 ......................aGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGAGg..................................................... len:19 al:5 ......................UGAAAUACUCUGACGGAGUa.................................................... len:20 al:25 ......................UGAAAUACUuUGACGGAGUCAG.................................................. len:22 al:1 ......................UGAAAUACUCUGACGGgGUCAGC................................................. len:23 al:7 ......................UGAAAUACUCUGACaGAGUCAGC................................................. len:23 al:2 ......................UGAuAUACUCUGACGGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGAGUCcG.................................................. len:22 al:2 ......................UGAAAUACUCUGgCGGAGUCAGC................................................. len:23 al:3 ......................UGAAAUACUCUGACGGAGUCA................................................... len:21 al:4 ......................UGAAAUACUCUGACGGAc...................................................... len:18 al:1 ......................UGAAAUACUCUGACGGAGUCAGCUUu.............................................. len:26 al:5 ......................UGAAAUACUCUGACGGAGUCgGC................................................. len:23 al:4 ......................UGAAAUACUCUGACGGAGcCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGaAGUCAGC................................................. len:23 al:4 ......................UGAAAUACUCUGACGGAGUCAGCUc............................................... len:25 al:1 ......................UGAAAUACUCUGACGGAGUCAa.................................................. len:22 al:24 ......................UGAAAUACUCUGACGGAGUCAuC................................................. len:23 al:1 ......................UGAAgUACUCUGACGGAGUC.................................................... len:20 al:4 ......................UGAAAUACUCUGACGGAGUCAGCUUCAGUGu......................................... len:31 al:4 ......................aGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:3 ......................UGAAAUACUCUGACGGAGUCuGC................................................. len:23 al:1 ......................UGAAAUACUCUGACGGAGgC.................................................... len:20 al:1 ......................UGAAAUACUCUGACGGcGUCAGC................................................. len:23 al:2 ......................UGAAAUACUCUGACGGAGaC.................................................... len:20 al:2 ......................UaAAAUACUCUGACGGAGUC.................................................... len:20 al:1 ......................UGAAAUACUCUGACaGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCcGACGGAGUCAGC................................................. len:23 al:2 ......................UGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:122 ......................UGAgAUACUCUGACGGAGUCAG.................................................. len:22 al:3 ......................UGAAAUACUCUGACGGAaUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGA....................................................... len:17 al:4 ......................UGAAgUACUCUGACGGAGUCAGCU................................................ len:24 al:2 ......................UGAAAUACUCUGACGGAGcCAGC................................................. len:23 al:2 ......................UGAAAUACUCUGACGGAGUCAGuU................................................ len:24 al:4 ......................UGAAAUACUCUGACGGAGc..................................................... len:19 al:10 ......................UGAAAUACUCUGACGGAGUC.................................................... len:20 al:171 ......................UGAAAUACUCUGACGGAGa..................................................... len:19 al:3 ......................UGAAAUACcCUGACGGAGUCAGC................................................. len:23 al:3 ......................UGAAAUACUCUGACGGAGUCAGCUg............................................... len:25 al:1 ......................UGAAAUACUCUGACGGAGUCAGg................................................. len:23 al:3 ......................UGAAAUACUCcGACGGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGgCGGAGUC.................................................... len:20 al:4 ......................UGAAAcACUCUGACGGAGUCAGC................................................. len:23 al:4 ......................cGAAAUACUCUGACGGAGUC.................................................... len:20 al:1 ......................UGAAAUACUCUGACGGAGUCAc.................................................. len:22 al:8 ......................UGAAAUACUuUGACGGAGUC.................................................... len:20 al:1 ......................UGAAAUACUCUGgCGGAGUCAGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGgGUC.................................................... len:20 al:1 ......................UGAAAUACcCUGACGGAGU..................................................... len:19 al:1 ......................UGAAAUACUCUGACGGAGUCgGCU................................................ len:24 al:1 ......................UGAAAUACUCUGACGGAGUCAGaU................................................ len:24 al:1 ......................UGAAAUgCUCUGACGGAGUCAGC................................................. len:23 al:1 ......................UGAAAUACUCUGACGGAGUCAGCUUC.............................................. len:26 al:2 ......................UGAAAUACUCUGACG......................................................... len:15 al:1 ......................UGAAAUACUCUGACGGAGUCAu.................................................. len:22 al:3 ......................UuAAAUACUCUGACGGAGUC.................................................... len:20 al:1 ......................UGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1099 ......................UGAAAUACUCcGACGGAGUC.................................................... len:20 al:1 ......................UGgAAUACUCUGACGGAGUCAGC................................................. len:23 al:8 ......................UGAAAUACUCUGACGG........................................................ len:16 al:1 ......................aGAAAUACUCUGACGGAGUC.................................................... len:20 al:3 ......................UGAgAUACUCUGACGGAGUCAGC................................................. len:23 al:5 ......................UGAAAUACUCUGACGGuGUCAGC................................................. len:23 al:1 ......................UGAAAUACUCUGACGGAGUCAG.................................................. len:22 al:133 ......................UGAAAUACUCUGACGGAGUCAGCc................................................ len:24 al:40 ......................UGAAAUACUCUGACGGAGgCAGC................................................. len:23 al:2 ......................UGAAAUACUCUGACGGAu...................................................... len:18 al:4 ......................UGAAAUACUCUGACGGAGUu.................................................... len:20 al:7 ......................UGAAAUACUCUGACGGAGUCAGCUUCAGc........................................... len:29 al:1 ......................UGAAAUACUCUGACGGAGUCAGu................................................. len:23 al:127 .......................GAAAUACUCUGACGGAGUCAGCU................................................ len:23 al:1 .......................GAAAUACUCUGACGGAGUC.................................................... len:19 al:1 .......................GAAAUACUCUGACGGAGUCAG.................................................. len:21 al:3 ............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:29 al:1 ............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:30 al:5 .............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:29 al:14 .............................................UUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:29 al:30 .............................................UUCAGUGCACUCCAUCAGAAUAUUUUGC..................... len:28 al:2 .............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCa.................... len:29 al:10 .............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCG.................... len:29 al:3 .............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCc.................... len:29 al:9 .............................................UUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:28 al:7 ..............................................UCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:27 al:1 ...............................................CAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:27 al:1 ................................................AGUGuACUCCAUCAGAAUAUUUUGC..................... len:25 al:2 ..................................................UGuACUCCAUCAGAAUAUUUUGCG.................... len:24 al:1 ..................................................UGuACUCCAUCAGAAUAUUUUGC..................... len:23 al:7 ...................................................GCACUCCAUCAGAAUAUUUUGCu.................... len:23 al:1 ...................................................GuACUCCAUCAGAAUAUUUUGCG.................... len:23 al:4 ...................................................GaACUCCAUCAGAAUAUUUUGC..................... len:22 al:1 ...................................................GCACUCCAUCAGAAUAUUUUGu..................... len:22 al:1 ...................................................GuACUCCAUCAGAAUAUUUUGC..................... len:22 al:8 ...................................................GCACUCCAUCAGAAUAUUUUGCc.................... len:23 al:1 ....................................................CACUCCAUCAGAAUAUUUUGC..................... len:21 al:1 ....................................................uACUCCAUCAGAAUAUUUUGC..................... len:21 al:32 ....................................................aACUCCAUCAGAAUAUUUUGC..................... len:21 al:2 ....................................................aACUCCAUCAGAAUAUUUUGCG.................... len:22 al:3 ....................................................uACUCCAUCAGAAUAUUUUGCG.................... len:22 al:7