Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000010:8012916-8013008 plus Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_3400.ps Locus Name: Cluster_3400 UAUGCAGUAAGUUUUGUGUUUUUACUUCAAUGUUAUCGGUUUGUUUAAAACGAACCGAUAACAUUGAAGUUAAAACACAAAACUUGUAAACAA .......(((((((((((((((.((((((((((((((((((((((...)))))))))))))))))))))).)))))))))))))))....... (-49.00) ...................UUUUACUUCAAUGUUAUCGGUUUGU................................................. len:25 al:1 ....................UUUACUUCAAUGUUAUCGGUUUGc................................................. len:24 al:15 ....................cUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:2 ....................UUUACUUCAAUGUUAUCGGUUU................................................... len:22 al:5 ....................UUUACUUCAAUGUUAUCGGUUa................................................... len:22 al:1 ....................UUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:60 ....................UUUACUUCAAUGUUAUCGaUUUGU................................................. len:24 al:11 ....................UUUACUUCAAcGUUAUCGGUUUGU................................................. len:24 al:2 ....................UUUACUUCAAUGUUAUCGGUUUGg................................................. len:24 al:2 ....................UUUACUUCAAUGUUAUCGGUUUGa................................................. len:24 al:2 ....................UUUACUUCAAUGUUAUCGGUUc................................................... len:22 al:2 ....................UUUACUUCAAUGUgAUCGGUUUGU................................................. len:24 al:2 ....................UUUACUUCAAUGUUAcCGGUUUGU................................................. len:24 al:1 ....................UUUACUUCAAUGUUAUCGGUgUGU................................................. len:24 al:1 ....................UUUACUUCAAUGUUAUCGGUUUGUU................................................ len:25 al:2 .....................UUACUUCAgUGUUAUCGGUUUGU................................................. len:23 al:22 .....................UaACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:7 .....................UUACUUCAAUaUUAUCGGUUUGU................................................. len:23 al:2 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.....................UUACUUCAAUGUUAUCGGUcUG.................................................. len:22 al:1 .....................UUACUUCAAUGUUAUCuGUUUGU................................................. len:23 al:6 .....................UUACUUCAAUGUUAUCGGUg.................................................... len:20 al:1 .....................UUACUUCAAUGUUAUCGGUUUG.................................................. len:22 al:43 .....................UUACUUCAcUGUUAUCGGUUUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUAUCGGUUUGUUUu.............................................. len:26 al:1 .....................UUACUUCAAUGUUAUCGGUUUaU................................................. len:23 al:40 .....................UUACUUCAAUGUUAUCGGUUUGg................................................. len:23 al:598 .....................UUACUUCuAUGUUAUCGGUUUGU................................................. len:23 al:3 .....................UUACUUCAAUGUUAUCGGUUUGUgU............................................... len:25 al:1 .....................UUACUUCAAUGUUAcCGGUUUGU................................................. len:23 al:19 .....................UUACUUCAAUGUUAUCGaUUUG.................................................. len:22 al:1 .....................UUACUUCAAUGUUAUCGGUaUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUAUCGGUUUc.................................................. len:22 al:1 .....................cUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:60 .....................UUACUUCAAUGUaAUCGGUUUGU................................................. len:23 al:2 .....................UUACUUCAAUGUUAUCGGcUUGUU................................................ len:24 al:1 .....................UUACUUCAAUGUUAUCGGUc.................................................... len:20 al:1 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.....................UUACUUCAAUGUUAUCGGcUU................................................... len:21 al:1 .....................UUAuUUCAAUGUUAUCGGUUUGU................................................. len:23 al:3 .....................UUACUUCAAUGUUAUCGGUUUGUg................................................ len:24 al:34 .....................UUACUUCAAUGUUAaCGGUUUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUAUCGGUUgGU................................................. len:23 al:5 .....................cUACUUCAAUGUUAUCGGUUUG.................................................. len:22 al:1 .....................UUgCUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:3 .....................UUACUUCAAUGUUAUCGG...................................................... len:18 al:1 .....................UUACUUCAAUGUUAUCGuUUUGU................................................. len:23 al:1 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.....................cUACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:7 .....................UUACUUCAAUGUUAUCGGUUUGUUUA.............................................. len:26 al:5 .....................UUACcUCAAUGUUAUCGGUUUGU................................................. len:23 al:25 .....................UgACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1 .....................UUACUUCAAUGUUAUCGGg..................................................... len:19 al:2 .....................UUACaUCAAUGUUAUCGGUUUGU................................................. len:23 al:3 .....................UUACUUCAAUGUaAUCGGUUUGUU................................................ len:24 al:1 .....................UUACUUCAAUGUUgUCGGUUUGUU................................................ len:24 al:4 .....................UUgCUUCAAUGUUAUCGGUUUG.................................................. len:22 al:1 .....................UUACUUCAAcGUUAUCGGUUUGU................................................. len:23 al:11 .....................UUACUUCAAUGUUuUCGGUUUGU................................................. len:23 al:2 .....................UUACUUCAAUGUUAUCGGgUUGU................................................. len:23 al:5 .....................UUACUUCAAUGUUcUCGGUUUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUAUCGGUUcGUU................................................ len:24 al:1 .....................UUACUUuAAUGUUAUCGGUUUGUU................................................ len:24 al:1 .....................UUACUUCAAUGUUAUCGGUUU................................................... len:21 al:20 .....................UUACUUCAgUGUUAUCGGUUUGUUU............................................... len:25 al:1 .....................UUACUUCAAUGUUAUCGGgUUGUU................................................ len:24 al:2 .....................UUACUUCAAUGUUAUCGGUgUG.................................................. len:22 al:2 .....................UUACUcCAAUGUUAUCGGUUUGU................................................. len:23 al:19 .....................UUACUUCgAUGUUAUCGGUUUGUU................................................ len:24 al:5 .....................UUACUUCAAUGUUAUCGGUUUa.................................................. len:22 al:8 .....................UUACUUCAAUGUUAUCGGUgUGU................................................. len:23 al:5 .....................UUACUUCAAUGUUAUCGGUUcGU................................................. len:23 al:3 .....................UUACUUCAAUGUUAUCGGUUUGaU................................................ len:24 al:2 .....................UUACUUCAAUGUUAUCGGUUUGUUa............................................... len:25 al:60 .....................UUACUUCAAUGUUAUCGGUUgG.................................................. len:22 al:2 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.....................UUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:6806 .....................UUACgUCAAUGUUAUCGGUUUGU................................................. len:23 al:2 .....................UUACUUCAAUGUUAUCGGUU.................................................... len:20 al:16 .....................UUACUUCAAUGUUAUCcGUUUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUgUCGGUUUGU................................................. len:23 al:23 .....................UUACUUCAAUGUUAUCGGc..................................................... len:19 al:4 .....................UUACUaCAAUGUUAUCGGUUUGU................................................. len:23 al:2 .....................UUACUUCAAUGUUAUCaGUUUGU................................................. len:23 al:11 .....................UUACUUCAAUGaUAUCGGUUUGU................................................. len:23 al:1 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.....................UUACUUCAAUGUUAUCGGUUc................................................... len:21 al:6 .....................UUACUUCAAUGgUAUCGGUUUGU................................................. len:23 al:2 .....................UUACUUCAAUGUUAUCGGUUUGUa................................................ len:24 al:102 .....................UUACUUCgAUGUUAUCGGUUUGU................................................. len:23 al:30 .....................UUACUUCAAUGUUAUCGcUUUGU................................................. len:23 al:1 .....................UUACUUCAAUGUUAUCGaUUUGU................................................. len:23 al:1046 .....................UUACaUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1 .....................UUACUUCAAUGUUAUCGGUUUGc................................................. len:23 al:1735 ......................cACUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:5 ......................UACUUCAgUGUUAUCGGUUUGU................................................. len:22 al:29 ......................UACUUCAAUGUUAUCGGUUUGc................................................. len:22 al:1990 ......................UAuUUCAAUGUUAUCGGUUUGU................................................. len:22 al:7 ......................cACUUCAAUGUUAUCGGUUUGUUU............................................... len:24 al:1 ......................cACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:99 ......................UACUUCAAUGUUAUCaGUUUGU................................................. len:22 al:7 ......................UACUUCAgUGUUAUCGGUUUGUU................................................ len:23 al:3 ......................UACUUCAAUGUUAUCGGUUUuU................................................. len:22 al:2 ......................UACUcCAAUGUUAUCGGUUUGUU................................................ len:23 al:2 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......................UACUUCAAUGUUAUCGGUUUGUaUA.............................................. len:25 al:1 ......................UACgUCAAUGUUAUCGGUUUGU................................................. len:22 al:2 ......................UACUUCAAUGUUAUCGGUU.................................................... len:19 al:9 ......................UACUUCAAUGUUgUCGGUUUGUU................................................ len:23 al:2 ......................aACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:120 ......................UACUUCAAUGUUgUCGGUUUGU................................................. len:22 al:11 ......................UACUUCAAUGUUAUgGGUUUGU................................................. len:22 al:1 ......................UACUUCAAUGUUAUCGGUUcGU................................................. len:22 al:5 ......................UACUUCAAUGUUAUCGGUaUGUU................................................ len:23 al:1 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.......................ACUUCAAUGUUAUCGGUUUGa................................................. len:21 al:3 .......................ACUUCAAUGUUAUCGGUUUaU................................................. len:21 al:1 .......................ACUUCAAUGUUAUCGGUUUGUU................................................ len:22 al:1 ........................CUUCAAUGUUAUCGGUUUGa................................................. len:20 al:2 ........................CUUCAAUGUUAUCGGUUUGU................................................. len:20 al:7 ........................CUUCAAUGUUAUCGGUUUGUU................................................ len:21 al:1 ........................CUUCAAUGUUAUCGGUUUGc................................................. len:20 al:3 ........................CUUCAAUGUUAUCGGUUU................................................... len:18 al:1 ........................CUUCAAUGUUAUCGGUUUGUUa............................................... len:22 al:1 .........................UUCAAUGUUAUCGGUUUGc................................................. len:19 al:19 .........................UUCAAUGUUAUCGaUUUGU................................................. len:19 al:21 .........................UUCAAUGUUAUCGGUUUGUa................................................ len:20 al:4 .........................UUCAAUGUUAUCGGUUUGU................................................. len:19 al:88 .........................UUCAAUGUUAUCGGUUUGUc................................................ len:20 al:6 .........................UUCAAUGUUAUCGGUUUGgU................................................ len:20 al:3 .........................UUCAAUGUUAUCGGUUUGg................................................. len:19 al:7 .........................UUCAAUGUUAUCGGUUUGUU................................................ len:20 al:36 .........................UUCAAUGUUAUCGGUUUGcU................................................ len:20 al:1 .........................UUCAAUGUUAUCGGUUUGUaU............................................... len:21 al:2 .........................UUCAAUGUUAUCGGUUUG.................................................. len:18 al:1 .........................UUCAAUGUUAUCGGUUUGUg................................................ len:20 al:1 .........................UUCAAUGUUAUCGGUUUGa................................................. len:19 al:5 .........................UUCAAUGUUAUCGGUUUGUUa............................................... len:21 al:1 .........................UUCgAUGUUAUCGGUUUGUU................................................ len:20 al:1 .........................UUCAAUGUUAUCGGUUUaU................................................. len:19 al:1 ..........................UCAAUGUUAUCGGUUUGU................................................. len:18 al:3 ...........................CAAUGUUAUCGGUUUGUUa............................................... len:19 al:1 ............................uAUGUUAUCGGUUUGUU................................................ len:17 al:1 ............................AAUGUUAUCGGUUUGUU................................................ len:17 al:1 ..................................................CGAACCGAUAACAUUGAAGUUAAAACACA.............. len:29 al:1 ...................................................GAACCGAUAACgUUGAAGUUAA.................... len:22 al:1 ...................................................GAACCGAUAACAUUGAAGaU...................... len:20 al:1 ...................................................GAACCGAUAACAUUGAAa........................ len:18 al:1 ...................................................GAACCGAUAACAUUGgAGU....................... len:19 al:1 ...................................................GAACCGAUAACAUUGAAGUU...................... len:20 al:2 ...................................................GAACCGAUAACAUUGAAGUUAAAu.................. len:24 al:1 ...................................................GAACCGAUAACAUUGAAGUUA..................... len:21 al:7 ...................................................GAACCGAUAACAUUGAAu........................ len:18 al:2 ...................................................GAACCGAUAACAUUGAAGUUAA.................... len:22 al:2 ...................................................GAACCGAUAACAUUGA.......................... len:16 al:1 ...................................................GAACCGAUAACAUUGAAGU....................... len:19 al:3 ...................................................GAACCGAUAACAUUGAAG........................ len:18 al:7 ...................................................GAACCGAUAACAUUGAAGc....................... len:19 al:2 ...................................................GAACCGAUAACAUUGAAGa....................... len:19 al:1 ...................................................GAACCGAUAACAUUGAAc........................ len:18 al:2 ...................................................GAgCCGAUAACAUUGAAGUUA..................... len:21 al:1