Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam Location: Pocillopora_meandrina_HIv1___Sc0000008:5387738-5387830 minus Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_2856.ps Locus Name: Cluster_2856 UAUUGCUCAUUCAAAUGCUCGCUGGAAUUGUACAGAAGAUGAUUUAAUCAACUUUUCUACAAUUCCAGUGGAUAUUUGUUUCAGAAACAUUUA .....((.(..((((((.((((((((((((((.(((((.((((...)))).))))).)))))))))))))).))))))..).))......... (-30.90) .............AAUGCUCaCUGGAAUUGUAC............................................................ len:20 al:1 .................CUCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:27 al:1 .................CUCGCUGGAAUUGUACAGAAGAUG.................................................... len:24 al:1 ..................UCGCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:10 ..................UCGCUGGAAUUGUACAGu......................................................... len:18 al:1 ..................UCaCUGGAAUUGUACAGAAGAUGAU.................................................. len:25 al:1 ..................UCGCUGGgAUUGUACAGAAGAUGA................................................... len:24 al:1 ..................UCGCUGGAAUUGUACAGAAGAUGg................................................... len:24 al:1 ..................UCaCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:19 ..................UCGCUGGAAUUGUACAGAAGAUa.................................................... len:23 al:1 ..................UCGCUGGAAUUGUACAGAAGAUGc................................................... len:24 al:1 ..................cCGCUGGAAUUGUACAGAAG....................................................... len:20 al:1 ..................UCGCUGGAAUUGUACAGAAGAgG.................................................... len:23 al:2 ..................UCGCUGGAAUUGUACAGAAGA...................................................... len:21 al:1 ..................UCGCUGGAAUUGUACAGAAGAUGAUUUc............................................... len:28 al:1 ..................UCGCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:8 ..................UCaCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:8 ..................UCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:26 al:2 ..................UCGCUGGAAUUGUACAGA......................................................... len:18 al:4 ..................UCGCUGGAAUUGUACAGAAGAUGu................................................... len:24 al:2 ..................UCGCUGGAAUUGUACAGAAGAUuA................................................... len:24 al:1 ..................UCGCUGGAAUUGUACAGAAGAU..................................................... len:22 al:1 ..................UCaCUGGAAUUGUACAGA......................................................... len:18 al:3 ...................CGCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:1 ...................CaCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:2 ...................CGCUGGAAUUGUACAGAAGAUGAgU................................................. len:25 al:2 ...................CGCUGGAAUUGUACAGAAGAUGg................................................... len:23 al:8 ...................CGCUGGAAUUGUACAGgAGAUGA................................................... len:23 al:1 ...................CGCUaGAAUUGUACAGAAGAUGA................................................... len:23 al:1 ...................CGCUGGAAUUGUACAGAAGAUGAUa................................................. len:25 al:11 ...................CGCUGGAAUUGUACAGAAGAUaA................................................... len:23 al:3 ...................CGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:139 ...................CGCUGGAgUUGUACAGAAGAUGA................................................... len:23 al:1 ...................CGCUGcAAUUGUACAGAAGAUG.................................................... len:22 al:1 ...................CGCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:21 ...................CaCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:8 ...................CGCUGGAAUUGUACAGAAGAUGAc.................................................. len:24 al:1 ...................CcCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:1 ...................uGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:2 ...................CGCUGGAAUUGUACAGAAGAUGu................................................... len:23 al:3 ...................CGCUGGAAUUGUACAGAgGAUGAU.................................................. len:24 al:1 ...................CGCUGGAAUUGUACAGAAGAUGAa.................................................. len:24 al:1 ...................CGCUGGAAUUGUACAGAAGAaG.................................................... len:22 al:1 ...................CaCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:3 ...................CGCUGGAAUUGUACAGAAGAUu.................................................... len:22 al:2 ...................CGCUGGAAUUGUACAGAAGAUa.................................................... len:22 al:5 ...................CaCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:39 ...................CGCUGGgAUUGUACAGAAGAUGA................................................... len:23 al:1 ...................CGCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:7 ...................CaCUGGAAUUGUACAGAAGAU..................................................... len:21 al:1 ...................CGCUGGAAUUGUACAGAAGAUGc................................................... len:23 al:1 ....................GCUGGAAUUGUACAGAAGAUGu................................................... len:22 al:5 ....................GCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:43 ....................GCUGGAAUUGUACAGAAGAUGc................................................... len:22 al:1 ....................GCUGGAAUUGUACAGAAGAcGA................................................... len:22 al:1 ....................GCUGGAAUUGUACAGAAGAUGAUUUu............................................... len:26 al:1 ....................GCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:1 ....................aCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:54 ....................GCUGaAAUUGUACAGAAGAUGA................................................... len:22 al:1 ....................aCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:5 ......................UGuAAUUGUACAGAAGAUG.................................................... len:19 al:1 ......................UGGAAUUGUACAGAAGAUG.................................................... len:19 al:4 ......................UGGAAUUGUACAGAAGAUGAU.................................................. len:21 al:1 ......................UGGAAUUGUACAGAAGAUGA................................................... len:20 al:20 ......................UGGAAUUGUACAGAAGAUGg................................................... len:20 al:2 ......................UGGAgUUGUACAGAAGAUGA................................................... len:20 al:1 ................................................CAACUUUUCUACAAUUCCAGUGGA..................... len:24 al:3 ................................................CAACUUUUCUACAAUUCCAGa........................ len:21 al:3 ................................................CAACUUUUCUACAAUUCCAGUG....................... len:22 al:1 ................................................CAACUUUUCUACAAUUCCAGU........................ len:21 al:2 .................................................AACUUUUCUACAAUUCCAGcGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUuCAGU........................ len:20 al:2 .................................................AACUUUUCcACAAUUCCAGUGGA..................... len:23 al:1 .................................................AgCUUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AuCUUUUCUACAAUUCCAGUG....................... len:21 al:1 .................................................AACUUUUCUACAAUUCCAGUGG...................... len:22 al:145 .................................................AACUUUUCUAuAAUUCCAGUGG...................... len:22 al:1 .................................................AACUUcUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAaU........................ len:20 al:5 .................................................AACUUUUCUACAAUUCCAGUGGc..................... len:23 al:29 .................................................AACUUUUCUACAAUUCCAGUa....................... len:21 al:18 .................................................AACUUUUCUACAAUUCCAcU........................ len:20 al:1 .................................................AACUUUUCUACAAUUCCAGUaG...................... len:22 al:4 .................................................AACUgUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAGUGa...................... len:22 al:58 .................................................AACUUUUCUACAAUcCCAGU........................ len:20 al:1 .................................................AACUUUUCUACAAUUCCAGgGG...................... len:22 al:1 .................................................AcCUUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAGg........................ len:20 al:3 .................................................gACUUUUCUACAAUUCCAGUGG...................... len:22 al:2 .................................................AACUUUUCUACAAUUCCAGU........................ len:20 al:147 .................................................AACUUUUCUACAAUUCCAGUGGuUA................... len:25 al:1 .................................................AACUUUUCUACAAUUCCAGcG....................... len:21 al:3 .................................................AACcUUUCUACAAUUCCAGU........................ len:20 al:1 .................................................AACcUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAGUGGg..................... len:23 al:21 .................................................AACUUUUCUACAAUUCCAGUGGu..................... len:23 al:98 .................................................AACUUUUCUACAAUUCCgGU........................ len:20 al:1 .................................................AACUUUUCUACAAUUCCAGc........................ len:20 al:37 .................................................gACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCgGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCuGU........................ len:20 al:1 .................................................AACUUUUCUACAAUcCCAGUGGA..................... len:23 al:3 .................................................AACUUUUCUACAAUUCCAGaG....................... len:21 al:2 .................................................AACUUUUCUACAAUUCC........................... len:17 al:1 .................................................AAuUUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAGUGu...................... len:22 al:19 .................................................AgCUUUUCUACAAUUCCAGUGG...................... len:22 al:1 .................................................AACUUUUCUACAAUUCCAGUGc...................... len:22 al:11 .................................................AgCUUUUCUACAAUUCCAGU........................ len:20 al:1 .................................................AACcUUUCUACAAUUCCAGUG....................... len:21 al:1 .................................................cACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAGa........................ len:20 al:2 .................................................AACUUUUCUACAAUUCCAGgG....................... len:21 al:5 .................................................AACUUUUCUACAAUUCCAGUGGA..................... len:23 al:274 .................................................AACUUUUCUACAAUUCCAGUG....................... len:21 al:84 .................................................AACUUUUCUACAAUUCuAGUG....................... len:21 al:1 .................................................AACUUUUCUACAAUUCCAGUGGAUu................... len:25 al:9 .................................................AACUUUUCcACAAUUCCAGU........................ len:20 al:1 .................................................AACUUUUCUgCAAUUCCAGUGGA..................... len:23 al:1 .................................................AACUUUUCUACAAUUCCAG......................... len:19 al:2 .................................................AAuUUUUCUACAAUUCCAGUGG...................... len:22 al:1 .................................................AACUUUUCUACAAUUCCAGUGGAUA................... len:25 al:5 .................................................AACUUUUCUACAAUUCCAGUcG...................... len:22 al:1 .................................................AACUUUUCUACAAUUCCAGUGcA..................... len:23 al:1 .................................................AACUUUUCUACAgUUCCAGUG....................... len:21 al:1 ..................................................ACUUUUCUACAAUUCCAGU........................ len:19 al:1 ...................................................CUUUUCUACAAUUCCAGUGGAUu................... len:23 al:1 ...................................................CUUUUCUACAAUUCCAGUGG...................... len:20 al:1