Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:3619341-3619435 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_2836.ps
Locus Name: Cluster_2836
GGGGUAUCUUAAUACACACACAUUUUUAAACUGAAACACUGCAAUUGUUGUUGUGCUUUGGUUCAAAAAUGUCUGUAUAUCAAGAAAAGUCAUUA
((....((((.(((.(((.((((((((.(((((((.(((.((((...)))).))).))))))).)))))))).))).))).))))....)).... (-22.70)
...................ACAUUUUUAAACUGAAACACUGCA.................................................... len:24 al:1
....................CAUUUUUAAACUGAAACACUGCAAUUGUUGU............................................ len:31 al:1
....................CAUUUUUAAACUGAAcCACUGCAAUUGUUGU............................................ len:31 al:1
....................CAUUUUUAAACUGAAACACUGCg.................................................... len:23 al:3
....................CAUUUUUgAACUGAAACACUGC..................................................... len:22 al:2
....................CAUUUUUAAACUGAAACACUGCAAU.................................................. len:25 al:1
....................CAUUUUUAAACUGAAACACUGCAA................................................... len:24 al:1
....................CAUUUUUAAACUGAAACACUGCA.................................................... len:23 al:20
....................CAUUUUUAAACUGAAACACUaC..................................................... len:22 al:2
....................CAUUUUUAAACUGAAACACUGC..................................................... len:22 al:19
....................CAUUUUUAAACUGAAACACUGa..................................................... len:22 al:3
....................CAUUUUUAAACUGAAACACUGCAAgU................................................. len:26 al:2
....................uAUUUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUGu..................................................... len:22 al:4
....................CAUcUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACcGAAACACUGC..................................................... len:22 al:1
.....................AUUUUUAAACUGAAACACUGCA.................................................... len:22 al:6
.....................AUUUUUAAgCUGAAACACUGCA.................................................... len:22 al:1
......................UUUUUAAACUGAAACACUGCA.................................................... len:21 al:5
......................UUUUUAAACUGAAACACUGC..................................................... len:20 al:2
......................UUUUUAAACUGAAACACUGu..................................................... len:20 al:1
......................UUUUUAAACUGAAACACUGa..................................................... len:20 al:2
.........................UUAAACUGAAACACUGCAAUUGUUGUUGU......................................... len:29 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUCg..................... len:24 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUC...................... len:23 al:1
..................................................UUGUGCgUUGGUUCAAAAAUGUCU..................... len:24 al:1
..................................................UUGUGCUUUGGUUCAAAA........................... len:18 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUCU..................... len:24 al:3
..................................................UUGUGCUUUGGUUCAAAAAUGU....................... len:22 al:3
..................................................UUGUGCUUUGGUUuAAAAA.......................... len:19 al:1
...................................................cGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................aGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUGgCU..................... len:23 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCUc.................... len:24 al:1
...................................................UaUGCUUUGGUUCAAAAAUG........................ len:20 al:1
...................................................UGcGCUUUGGUUCAAAAA.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAAAU......................... len:19 al:2
...................................................UGUGCUcUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCgAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAA.......................... len:18 al:39
...................................................UGUGCUUUGGUUCAAAAAUGcC...................... len:22 al:5
...................................................UGUGCUUUGGUUCAAAAAUa........................ len:20 al:1
...................................................UGUGCUUUGGUUCAA............................. len:15 al:1
...................................................UGUGCUUUGGUUCAAAAAUGc....................... len:21 al:2
...................................................UGUGCUUUGGUUCAAAAAa......................... len:19 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUCc..................... len:23 al:3
...................................................UGUGCUUUGGUUCAAAAAUGUCg..................... len:23 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUCa..................... len:23 al:10
...................................................UGUGCUUUGGUUCAAAAAUGU....................... len:21 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUCaG.................... len:24 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCUu.................... len:24 al:2
...................................................UGUGCUUUGGUUCAgAAAUGU....................... len:21 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCUa.................... len:24 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCU..................... len:23 al:11
...................................................UGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:148
...................................................UGUGCUUUGGUUCAAAAAUGUa...................... len:22 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUu...................... len:22 al:8
...................................................UGUGCUUUGGUUCAAAAu.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAAAUGa....................... len:21 al:2
...................................................UGUGCUUUGGUUCAAAAAUG........................ len:20 al:3
...................................................UGUGCUUUGGUUCAAAAAUGaC...................... len:22 al:1
...................................................cGUGCUUUGGUUCAAAAA.......................... len:18 al:1
.......................................................CUUUGGUUCAAAAAUGgCUG.................... len:20 al:1