Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000000:818027-818120 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_20.ps
Locus Name: Cluster_20
CCAUGUGUGCCUGUUGACCACAUGUUCUCUCUGCAGUAAGCAUGUUUUGACAUGCUUGCUGUAAAGAGAACUUGUAGUCAGUGGUAAAAGACAG
.......((((..(((((.(((.(((((((.((((((((((((((....)))))))))))))).))))))).))).))))).))))........ (-44.40)
CCAUGUGUGCCUGUUGACuACA........................................................................ len:22 al:7
.CAUGUGUGCCUGUUGACuACA........................................................................ len:21 al:1
....GUGUGCCUGUUGACuACA........................................................................ len:18 al:1
....................CAUGUUCUCUCUGCAGUAAGCAa................................................... len:23 al:1
....................CAUGUUCUCUCUGCAGUAAGC..................................................... len:21 al:1
.....................AUGUUCUCUCUGCgGUAAGCAUG.................................................. len:23 al:1
.....................AUGUUCUCUCUGCAGUAAGCAUGc................................................. len:24 al:2
.....................AUGUUCUCUCUGCAGUAAGCAUGUU................................................ len:25 al:1
.....................AUGUUCUCUCUGCAGUAAGCAUuU................................................. len:24 al:2
.....................AcGUUCUCUCUGCAGUAAGCAUG.................................................. len:23 al:1
.....................AUGUUCUCUCUGCAGUAgGCAUG.................................................. len:23 al:1
.....................AUGUUCUCUCUGCAGUAAGC..................................................... len:20 al:34
.....................AUGUUCUCUCUGCAGUAAGCAUGUa................................................ len:25 al:2
.....................AUGUUCUCUCUGCAGUAAGCAaG.................................................. len:23 al:1
.....................AUGcUCUCUCUGCAGUAAGC..................................................... len:20 al:1
.....................AUGUUCUCUCUGCAGUAAGuAUG.................................................. len:23 al:1
.....................AUGUUCUCUCUGCAGUAAGa..................................................... len:20 al:1
.....................AUGUUCUCUCUGCAGUAAGCAUGU................................................. len:24 al:2
.....................AUGUUCUCUCUGCAGUAAa...................................................... len:19 al:1
.....................AUGUUCUCUCUGCAGUAAGu..................................................... len:20 al:3
.....................AUGUUCUCUCUGCAGUAAGCAUGa................................................. len:24 al:1
.....................AUGUUCUCUCUGCAGUAAG...................................................... len:19 al:9
.....................cUGUUCUCUCUGCAGUAAGCAUGU................................................. len:24 al:1
.....................AUGUUCUCUCUGCAGUAAGCAUG.................................................. len:23 al:18
.....................AUGUUCUCUCUGCAuUAAG...................................................... len:19 al:1
.....................AUGUUCUCUCUGCAGUAAGCAUa.................................................. len:23 al:4
.....................AUGUUCUCUCUGCAGUAAGCAUu.................................................. len:23 al:1
.....................AUGUUCUCUCUGCAGUAAGCA.................................................... len:21 al:4
......................UGUUCUCUCUGCgGUAAGCAUGUU................................................ len:24 al:6
......................UGUUCUCUCUGCAGUAAGCAUGUgU............................................... len:25 al:1
......................UGUcCUCUCUGCAGUAAGCAUGU................................................. len:23 al:10
......................UGUUCUCUCUGCAGUAAGCgUGU................................................. len:23 al:15
......................UGUUCUCUCUGCuGUAAGCAUGU................................................. len:23 al:3
......................UGcUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGCAUGUcU............................................... len:25 al:1
......................cGUUCUCUCUGCAGUAAGCAU................................................... len:21 al:1
......................UGUUCUCUCUGCAGUAAGCA.................................................... len:20 al:5
......................UGUUCUCUCUGCAGUAAGCAg................................................... len:21 al:6
......................UGUUCUCUCUGCAGUAAGuAUG.................................................. len:22 al:17
......................UGUUCUCcCUGCAGUAAGCAUGUU................................................ len:24 al:4
......................UGUUCUCUCUGCAGUAAGCAaGU................................................. len:23 al:2
......................UGUUCUCUCUGCAGUAAGCAaG.................................................. len:22 al:11
......................UGUUCUCUCUGCAGUAAGCgUG.................................................. len:22 al:9
......................UGUUCUCUCUGCAGUAAGCAUGUUc............................................... len:25 al:4
......................UGUUCUCUCUGCAGUgAGCAUGUU................................................ len:24 al:3
......................UGUUCUCUCUGCAGUAuGCAUGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAAGCAcGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAAGCAUu.................................................. len:22 al:9
......................UGUUCUCcCUGCAGUAAGCAUG.................................................. len:22 al:9
......................UGUUuUCUCUGCAGUAAGCAUGU................................................. len:23 al:3
......................UGUUCUCUCUGuAGUAAGCAUGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAuGCAUG.................................................. len:22 al:1
......................UGUUCUCUCaGCAGUAAGCAUG.................................................. len:22 al:3
......................UaUUCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAAaCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGC..................................................... len:19 al:161
......................UGaUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:2
......................UGUUCUCUCUGCAGUAAGaAUG.................................................. len:22 al:1
......................UaUUCUCUCUGCAGUAAGC..................................................... len:19 al:1
......................UGUUCUCUCUGCAGUAAGCAUGUUaU.............................................. len:26 al:1
......................UGcUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:14
......................UGUUCUCUCUGCAGUAuGCAUGU................................................. len:23 al:4
......................cGUUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:43
......................UGUUCUCUCUGCAGUAAGCAUaU................................................. len:23 al:75
......................UGUUCUCUCUGCAGcAAGCAUG.................................................. len:22 al:3
......................cGUUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:18
......................UGUUCcCUCUGCAGUAAGCAUGUU................................................ len:24 al:3
......................UGUaCUCUCUGCAGUAAGCAUG.................................................. len:22 al:4
......................UGUUCUCUCUGCAGUAAaC..................................................... len:19 al:8
......................UGUaCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:2
......................UGcUCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:4
......................UGUUCUCUCUGCAGcAAGCAUGU................................................. len:23 al:5
......................cGUUCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:13
......................UGUUCUCUCUGCAGUAgGCAUGU................................................. len:23 al:16
......................UGUUCUCUCUGCAGUAAGCAUGaU................................................ len:24 al:14
......................UGUUCUCUCcGCAGUAAGCAUGUU................................................ len:24 al:2
......................UGUcCUCUCUGCAGUAAGCAU................................................... len:21 al:1
......................UGUUCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:1263
......................aGUUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:11
......................UGUUCcCUCUGCAGUAAGCAUGU................................................. len:23 al:8
......................UGUUCUCUCUGCAGUAAGCAgGU................................................. len:23 al:6
......................UGUUCUCUCUGCAGUgAGCAUG.................................................. len:22 al:3
......................UGUUCUCUCUGCAGUAAc...................................................... len:18 al:2
......................UGUUCUCUCUGCAGUAAGCAUc.................................................. len:22 al:9
......................UGUUCUCUCUGCAaUAAGCAUG.................................................. len:22 al:2
......................UGUUCUCUCUaCAGUAAGCAUGU................................................. len:23 al:3
......................UGUUCcCUCUGCAGUAAGCAUG.................................................. len:22 al:6
......................UGUUCUCUCUGCAGUAgGCAUG.................................................. len:22 al:11
......................UGUUCUCUCUGCAGUAAGCAUGUUUU.............................................. len:26 al:1
......................UGUUCUCUCUGCAGUAAGCgU................................................... len:21 al:6
......................UGUUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:3258
......................UGUUCUCUCUGCAGUAAGCAU................................................... len:21 al:94
......................UGUUCUCUCUGCAGUAAGCAUGUUa............................................... len:25 al:20
......................UGUUCUCUCUaCAGUAAGCAUG.................................................. len:22 al:3
......................UGUUCUCUCUGCAGUAAGg..................................................... len:19 al:1
......................UGUUCUCUCUGCAGUAAGCAUGUg................................................ len:24 al:43
......................UGUUCUCUCUGCAGUAAGCAUGgU................................................ len:24 al:49
......................UGUUCUCUCUGCAGUuAGCAUGU................................................. len:23 al:2
......................UGUUCUCUCUGCAGUAAGCAUGUUU............................................... len:25 al:13
......................UGUUCUCUCcGCAGUAAGCAU................................................... len:21 al:1
......................UGUUCUCUCUGCAGUAAGCuUGU................................................. len:23 al:3
......................UGUUCUCUCUGCAGUAAGCAUGc................................................. len:23 al:835
......................UGUgCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:3
......................UGUUCUCUCUGCAGUgAGCAUGU................................................. len:23 al:5
......................UGUUCUCUaUGCAGUAAGCAUGUU................................................ len:24 al:1
......................UGUUCUCUCUGuAGUAAGCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGCuUGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:2339
......................UGUUCUCUCUcCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUCUCUCUGCAGUA........................................................ len:16 al:10
......................UGUUCUCcCUGCAGUAAGCAUGU................................................. len:23 al:11
......................UGUUCUCUCUGuAGUAAGCAUGU................................................. len:23 al:2
......................UGUUCUCUCUGCAGUAAGCAUGa................................................. len:23 al:245
......................UGUUCUCgCUGCAGUAAGC..................................................... len:19 al:1
......................UGUUCUCUCUGCAGUcAGCAUG.................................................. len:22 al:1
......................UGUUCUCUCUGCAGUAAGCAc................................................... len:21 al:21
......................UGUUCUCUCUGuAGUAAGC..................................................... len:19 al:2
......................UGUUCUCUCUGCAGUAcGCAUGU................................................. len:23 al:1
......................UGUUCUCUCUGCAGUAAGCAUGUaU............................................... len:25 al:12
......................UGUUCUCUaUGCAGUAAGCAUGU................................................. len:23 al:1
......................UGUUCUCUCcGCAGUAAGCAUG.................................................. len:22 al:11
......................UGUUCUCUCUGCAGUAgGCAU................................................... len:21 al:2
......................UGUUCaCUCUGCAGUAAGCAUGU................................................. len:23 al:4
......................UaUUCUCUCUGCAGUAAGCAUGU................................................. len:23 al:5
......................UGUUCUCUCUGgAGUAAGCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGCAUGUaUU.............................................. len:26 al:6
......................UGUUCUCUCUGCAGUAAGuAU................................................... len:21 al:3
......................UGUUCUCUCaGCAGUAAGCAUGUU................................................ len:24 al:1
......................UGUUCUCUCUGCAGUAgGCAUGUU................................................ len:24 al:6
......................UGUUCUCUCUGCAGUAAGCAcGU................................................. len:23 al:5
......................UGUUCUCUCgGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUCUCUCUGCAGUAAaCAUGU................................................. len:23 al:5
......................UGUUCUCUCUGCAGUAAGCAa................................................... len:21 al:15
......................UGUUCUCUCUGCAGUAgGC..................................................... len:19 al:1
......................UGUUCUCUCUGCAGUAAGuAUGUU................................................ len:24 al:10
......................UGUUgUCUCUGCAGUAAG...................................................... len:18 al:1
......................UGUUCUCUCcGCAGUAAGCAUGU................................................. len:23 al:9
......................UGUUCUCUCUGCAGUAAGCAUGcU................................................ len:24 al:10
......................UGUUCUCUCUGCAGUAAGuAUGU................................................. len:23 al:51
......................UGUUCUCUCUGCAGUAAa...................................................... len:18 al:2
......................UGUUCUCUCUGCAGUAAGuA.................................................... len:20 al:1
......................UGUUCUCUCUGCAaUAAGCAUGU................................................. len:23 al:4
......................UGUUCUCUCUGCAGUAAuCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGCAUGg................................................. len:23 al:150
......................UGUUCUCUCUGCAGUAAGCgUGUU................................................ len:24 al:2
......................UGUcCUCUCUGCAGUAAGCAUG.................................................. len:22 al:2
......................UGUUCUCUCUGCAGUAAGCAUGUa................................................ len:24 al:794
......................UGUUCUCUCUGCAGUAAGu..................................................... len:19 al:27
......................UGgUCUCUCUGCAGUAAGC..................................................... len:19 al:2
......................UGUUCUCUCUGCAGUAcGCAUGUU................................................ len:24 al:1
......................UGUUCaCUCUGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUCUCUuUGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUaUCUCUGCAGUAAGCAUGU................................................. len:23 al:2
......................aGUUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:9
......................UGUUCUCUCUGCAGUAAGCAUGUc................................................ len:24 al:308
......................UGUUCUCUCUGCAGUAAGCAcG.................................................. len:22 al:47
......................aGUUCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:2
......................UGUUCUCUCUGCcGUAAGCAUGU................................................. len:23 al:2
......................UGUUCUCUCUGCgGUAAGCAUGU................................................. len:23 al:8
......................UaUUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUCUCUuUGCAGUAAGCAUGU................................................. len:23 al:3
......................UGUUCUCUCUGCAGcAAGC..................................................... len:19 al:1
......................UGUUCUCUCUGCAGU......................................................... len:15 al:5
......................UGUUCUCUCUGCgGUAAGCAUG.................................................. len:22 al:11
......................UGUUCUuUCUGCAGUAAGCAUG.................................................. len:22 al:3
......................UGUUCUCUCUuCAGUAAGCAUGU................................................. len:23 al:2
......................UGUUCUuUCUGCAGUAAGC..................................................... len:19 al:1
......................UGUUuUCUCUGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUcCUCUCUGCAGUAAGCAUGUU................................................ len:24 al:4
......................UGUUCUCUCUGCAGUAAGa..................................................... len:19 al:11
......................UGUUCUCUCUGCAGUAAGCAgG.................................................. len:22 al:72
......................UGUUCUCUCUGCAGUAAG...................................................... len:18 al:43
......................UGUUCUCUCUGCAGUAAGCcUG.................................................. len:22 al:1
......................UGUUCUCUCUGCAGUAAGCAUa.................................................. len:22 al:608
......................cGUUCUCUCUGCAGUAAGC..................................................... len:19 al:1
......................UGUUCUCUCUGCAGgAAGC..................................................... len:19 al:2
......................UGUUCUCUCUGCAGUAAGCAUuU................................................. len:23 al:10
......................UGaUCUCUCUGCAGUAAGCAUG.................................................. len:22 al:1
......................UGUUCUCUCUGCAGUAAGCAUcU................................................. len:23 al:2
......................aGUUCUCUCUGCAGUAAGC..................................................... len:19 al:1
.......................GUUCUCUCUGCAGUAAGCAUa.................................................. len:21 al:1
.......................uUUCUCUCUGCAGUAAGCAUGUU................................................ len:23 al:1
........................UUCUCUCUGCAGUAAGCAUa.................................................. len:20 al:1
........................UUCUCUCUGCAGUAAGCAUGUc................................................ len:22 al:1
........................UUCUCUCUGCAGUAAGCAUGUa................................................ len:22 al:1
........................UUCUCUCUGCAGUAAGCAUGUU................................................ len:22 al:2
.........................UCUCcCUGCAGUAAGCAUGUU................................................ len:21 al:1
.........................cCUCUCUGCAGUAAGCAUGUU................................................ len:21 al:1
.........................UCUCUCUGCAGUAAGCAU................................................... len:18 al:2
.........................UCUCUCUGCAGUAAGCAg................................................... len:18 al:1
.........................UCUCUCUGCAGUAAGCAUG.................................................. len:19 al:4
.........................UCUCUCUGCAGUAAGCAUGUc................................................ len:21 al:3
.........................UCUCUCUGCAGUAAGCAUuU................................................. len:20 al:1
.........................UCUCUCUGCAGUAAGCAUGUU................................................ len:21 al:7
.........................UCUCUCUGCAGUAAGCAUGa................................................. len:20 al:4
.........................UCUCUCUGCAGUAAGCAUa.................................................. len:19 al:1
.........................UCUCUCUGCAGUAAGCAUGc................................................. len:20 al:4
.........................UCUCUCUGCAGUAAGCAUGUa................................................ len:21 al:5
.........................UCUCUCUGCAGUAAGCAUGg................................................. len:20 al:1
.........................UCUCUCUGCAGUAAGCAUGU................................................. len:20 al:15
..........................CUCUCUGCAGUAAGCAUGUU................................................ len:20 al:1
..................................................CAUGCUUGCUGUAAAGAGAACUUG.................... len:24 al:1
...................................................AUGCUUGCUGUAAAGAGgACUUG.................... len:23 al:4
...................................................AUGCUUGCUGUAAAGAGAACUU..................... len:22 al:41
...................................................gUGCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAgAGAGAACU...................... len:21 al:1
...................................................AUGCUUGCUGUAAAGAGAACUUG.................... len:23 al:414
...................................................AUGCUUGCUGUgAAGAGAACUU..................... len:22 al:2
...................................................AUGCUcGCUGUAAAGAGAACUU..................... len:22 al:1
...................................................AUGCUUGCUGUAgAGAGAACUUG.................... len:23 al:7
...................................................AUGCUUGCUGUAAAGAGAACUUGc................... len:24 al:9
...................................................AUGCUUGCUGUAAAGAGAACc...................... len:21 al:7
...................................................AUGCUUGCUGUAgAGAGAACUU..................... len:22 al:1
...................................................AUGCUUGCUGUAAgGAGAACUUG.................... len:23 al:3
...................................................AUGCUUGCUaUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAaAACUU..................... len:22 al:1
...................................................uUGCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAGAACUUGa................... len:24 al:15
...................................................AUGCUUGCUGUAAAuAGAACUUG.................... len:23 al:1
...................................................AgGCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCgUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAGA......................... len:18 al:2
...................................................AUGCUUGCUGUAAAGgGAACUUG.................... len:23 al:1
...................................................AcGCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAGAACUa..................... len:22 al:4
...................................................AUGCUUGCUGUAAAGAGAAC....................... len:20 al:1
...................................................AUGCUUGCUGUAAAGAGAACUaG.................... len:23 al:3
...................................................AUGCUUGCUGUAAAGAGAACUUGU................... len:24 al:15
...................................................AUGCUUGCcGUAAAGAGAACUUG.................... len:23 al:5
...................................................AUGCcUGCUGUAAAGAGAACUUG.................... len:23 al:3
...................................................AUGCUUGCUGUAAAGAGAACUUu.................... len:23 al:3
...................................................AUGCUUGCUGUAAAGAGAACU...................... len:21 al:14
...................................................AUGCcUGCUGUAAAGAGAACUUGUA.................. len:25 al:1
...................................................AUGCUUGCUGUAAAGAGAgCUUG.................... len:23 al:2
...................................................AUGCUUGCUGUAAAGAGAACUUGUu.................. len:25 al:3
...................................................AUGCUUGCUGUAAAGAGAACUUGg................... len:24 al:2
...................................................AUGCUUGCUGUAAAGAGAACUcG.................... len:23 al:1
...................................................AUGCUUGCUGUAAgGAGAACUU..................... len:22 al:1
...................................................AUGuUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAGAACUUGUA.................. len:25 al:9
...................................................AUaCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................cUGCUUGCUGUAAAGAGAACUUG.................... len:23 al:1
...................................................AUGCUUGCUGUAAAGAGAACUgG.................... len:23 al:31
...................................................AUGCUcGCUGUAAAGAGAACUUGU................... len:24 al:1
...................................................AUGCUUGCUGUAAAGAGAACUc..................... len:22 al:6
...................................................AUGCUUGCUGUgAAGAGAACUUG.................... len:23 al:2
...................................................AUGCUUGCUGUAAAGAGAACUUc.................... len:23 al:2
...................................................AUGCUUGCUGUAAAGAGAACa...................... len:21 al:2
...................................................AUGCUUGCUGUAAAGAGAAu....................... len:20 al:1
...................................................AUGCUUGCUGUAAAGAGAACUUGcA.................. len:25 al:1
...................................................AUGCUUGCUGUAAAGAGAACUUa.................... len:23 al:86
...................................................AUGCUUGCUGUAAAGAGAACaU..................... len:22 al:1
...................................................AUGCUUGCUGUAAAGAGAAgUUG.................... len:23 al:1
....................................................UGCUUGCUGUAAAGAGAACUcG.................... len:22 al:1
....................................................UGCUUGCUGUAAAGAGAAuUUGU................... len:23 al:1
....................................................UGCUUGCUGUAAAGAGAACUUGc................... len:23 al:6
....................................................UGCUUGCUGUAAAGAGAACUUGa................... len:23 al:3
....................................................UGCUUGCUGUAAAGAGAACUUGUA.................. len:24 al:3
....................................................UGCUUGCUGUAgAGAGAACUUGU................... len:23 al:1
....................................................UGCUUGCUGUAAAGAGAACUUGg................... len:23 al:1
....................................................UGCUUGCUGUAAAGAGAACUUGU................... len:23 al:13
....................................................UGCUUGCUGUAAAGAGAACUUa.................... len:22 al:1
....................................................UGCUUGCUGUAAAGAGAA........................ len:18 al:1
....................................................UGCUUGCUGUAAAGAGAACUUG.................... len:22 al:7
.....................................................GCUUGCUGUAAAGAGAACUUGU................... len:22 al:4
.....................................................GCUUGCUGUAAAGgGAACUUG.................... len:21 al:2
.....................................................GCUUGCUGUAAAGAGAACUUu.................... len:21 al:1
.....................................................GCUUGCUGUAAAGAGAACUUGc................... len:22 al:3
.....................................................GCUUGCUGUAAAGAGAACUUGa................... len:22 al:2
.....................................................GCUUGCUGUAAAGAGAACUUGUA.................. len:23 al:2
......................................................CUUGCUGUAAAGAGAACUUa.................... len:20 al:2
......................................................CUUGCUGUAAAGAGAACUUG.................... len:20 al:4
......................................................CUUGCUGUAAAGAGAACUUGUA.................. len:22 al:2
.......................................................UUGCUGUAAAGAGAACUUGU................... len:20 al:3
.......................................................UUGCUGUAAAGAGAACUUGa................... len:20 al:1
...............................................................AAGAGAACUUGUAGUCAcUGGUAAAAGACA. len:30 al:1