Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:10129514-10129606 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.2-Pmea-sRNAseq-ShortStack-31bp-fastp-merged/ShortStack_out/strucVis/Cluster_1287.ps
Locus Name: Cluster_1287
UUGCUGUUUCAGCUGUAUAUCGAUGUACUUCAGAGCAAUUUUUUUUACAAAAAUUGCUCCGAAAUACAUCUAUGUAACGUUGAAAAUUUAUUG
......(((((((..(((((.((((((.(((.(((((((((((.....))))))))))).))).)))))).)))))..)))))))........ (-31.20)
........UCAGCUGUAUAUCGAcGUAC................................................................. len:20 al:1
...................cCGAUGUACUUCAGAGCAAUUUUU.................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAuUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCgGAGCAAUUUUUU................................................. len:24 al:6
....................CaAUGUACUUCAGAGCAAUUUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUaU.................................................. len:23 al:3
....................CGAUGUgCUUCAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUACUUCAGAGCAAUUUU................................................... len:22 al:123
....................CGAUGUACUUCAGAGCAAUUUUgUU................................................ len:25 al:1
....................CGAUGUACUUCAGAGCAAUUUUaU................................................. len:24 al:5
....................CGAUGUACUUCAGAGCAAUUgU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUa................................................... len:22 al:3
....................CGAUGUACUUCAGAGCAAUUgUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAGCAAUUg.................................................... len:21 al:2
....................gGAUGUACUUCAGAGCAAUU..................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUc..................................................... len:20 al:11
....................CuAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGuGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUg..................................................... len:20 al:1
....................CGAUGUACUUaAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUa................................................ len:25 al:13
....................CGAUGUACUUCAGAGCAAU...................................................... len:19 al:24
....................uGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:22
....................CGAUGUACUUCAGAaCAAUUUUU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCAAUUcUU.................................................. len:23 al:4
....................CGgUGUACUUCAGAGCAAUUUU................................................... len:22 al:1
....................CGAUGUACUUCgGAGCAAUUUUU.................................................. len:23 al:7
....................CGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1118
....................CaAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:14
....................CGAcGUACUUCAGAGCAAUUUUU.................................................. len:23 al:12
....................CGAUGUACUUCAGAGCAAUUgUUU................................................. len:24 al:1
....................CGAUGcACUUCAGAGCAAUUUUU.................................................. len:23 al:6
....................CGAUGUACUUCAGAGCAAUUU.................................................... len:21 al:44
....................CGAUGUACUUCAGAGCAAUUUUUUU................................................ len:25 al:47
....................CGAUGUgCUUCAGAGCAAUUUUUU................................................. len:24 al:6
....................CGAUGUACUUCAGAGCAAUcUUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAGCuAUUUUUU................................................. len:24 al:1
....................CGAUGUACcUCAGAGCAAUUUUUU................................................. len:24 al:5
....................CGAUGUACUUCAGAGCAAUa..................................................... len:20 al:2
....................CGAUGUACUUCAGAGCgAUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGAGCAAUUUUgU................................................. len:24 al:13
....................CGuUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAgGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUcCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAcUUUUU................................................. len:24 al:4
....................CGgUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:15
....................CGAUGUACUUCAGAGCAgUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGAGuAAUUUUUU................................................. len:24 al:2
....................CGAUGUACUUCAGAGCAgUUUUUU................................................. len:24 al:2
....................CGAUGUACUUCAGAGCAAUUUUUUc................................................ len:25 al:2
....................CGAUGUACUUCcGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACcUCAGAGCAAUUUU................................................... len:22 al:1
....................gGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:10
....................CGgUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:6
....................CGAcGUACUUCAGAGCAAUUUUUU................................................. len:24 al:6
....................CGAUGUACUUCAGAGCAAUUUUUUUU............................................... len:26 al:1
....................CGAUGUACUaCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUaUACUUCAGAGCAAUUUUU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCgAU...................................................... len:19 al:1
....................CGAUGUACUUCAGAGCAAUU..................................................... len:20 al:94
....................CGAUGUACUUCAGAGCAAUgUUU.................................................. len:23 al:2
....................CGAUGUACUUCAGAGCgAUUUUUU................................................. len:24 al:2
....................CGAUGUACUUCAGAGCAAUUUUUg................................................. len:24 al:2
....................CGAUGcACUUCAGAGCAAUUUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUgU.................................................. len:23 al:62
....................CGAUGUACUUCAGAGCAAc...................................................... len:19 al:1
....................CGAaGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................gGAUGUACUUCAGAGCAAU...................................................... len:19 al:1
....................CGAUGUACUUCAGgGCAAUUUUU.................................................. len:23 al:14
....................CGAUGUACUUCAGAGCAAUUc.................................................... len:21 al:7
....................CGAUGUACUUCAGAGCAAUUUUUUUa............................................... len:26 al:1
....................aGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:7
....................CGgUGUACUUCAGAGCAAUUU.................................................... len:21 al:2
....................CGAUGUACUcCAGAGCAAUUUUU.................................................. len:23 al:5
....................CGAUGUACUUCAGuGCAAUUUUU.................................................. len:23 al:2
....................CGAUGUACgUCAGAGCAAUUUUU.................................................. len:23 al:1
....................uGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:3
....................CGAUGUACUUCAGAGCAAUUUUUUUUACA............................................ len:29 al:1
....................gGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUaU............................................... len:26 al:4
....................CGAUGUACUUCAGAGCAAUUUUUUUUACAAA.......................................... len:31 al:2
....................CGAUGUACUUCAGAGCAAUUUUUgU................................................ len:25 al:2
....................CGAUGUACUUCAGAGCAAUUcUUU................................................. len:24 al:1
....................CGAUGUACcUCAGAGCAAUUUUU.................................................. len:23 al:6
....................CGAUGUACUUCAGAGCA........................................................ len:17 al:1
....................CGAUGUACUUCAGAGaAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUUUaU................................................ len:25 al:44
....................CGAUGUACUUCAGAGCAA....................................................... len:18 al:5
....................CGAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:2869
....................CGAUGUACUUCAGAGCAAUUUUg.................................................. len:23 al:6
....................CGAUGUACUUCAGAGCAAUUUUUc................................................. len:24 al:128
....................CGAUGUACUUCAGAGCAAUUUUa.................................................. len:23 al:39
....................CGAUGUACUUCAGAGCAAcUUUU.................................................. len:23 al:3
....................CGAUGUACUUCAGAGCAAUUUUUa................................................. len:24 al:356
....................CGAUGUACUUCAGAGCgAUU..................................................... len:20 al:1
....................aGAUGUACUUCAGAGCAAUUUUUU................................................. len:24 al:1
....................CGAUGUACUUCAGAGCAuUUUU................................................... len:22 al:1
....................CGAUGUACUUCAGAGCgAUUU.................................................... len:21 al:1
....................CGAUGUACUUCAGAGCAAUcUU................................................... len:22 al:1
....................CGgUGUACUUCAGAGCAAUU..................................................... len:20 al:1
....................CGAUGUACUUuAGAGCAAUUUUU.................................................. len:23 al:10
....................CGAUGUAaUUCAGAGCAAUUUUU.................................................. len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUc................................................... len:22 al:11
....................CGAUGUACUUCAGgGCAAUUUUUU................................................. len:24 al:11
....................CaAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:19
....................CGAUGUACUUCAGAGCAAUUUUc.................................................. len:23 al:308
....................CGAUGUACUUCAGAGCAAUUUUcU................................................. len:24 al:1
....................CuAUGUACUUCAGAGCAAUUUUU.................................................. len:23 al:2
....................CGAUGUACUUCgGAGCAAUUUUUUU................................................ len:25 al:1
....................CGAUGUACUUCAGAGCAAgU..................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUUUcU.................................................. len:23 al:3
.....................GAUGUACUUCAGAGCAAUUUUUUa................................................ len:24 al:1
.....................GAUGUACUUCAGAGCAAUUUUU.................................................. len:22 al:8
.....................GAcGUACUUCAGAGCAAUUUUUU................................................. len:23 al:2
.....................GAUGUACUUCAGAGCAAUUU.................................................... len:20 al:1
.....................GAUGUACUUCAGAGCAAUUUUUc................................................. len:23 al:2
.....................GAUGUACUUCAGAGCAAUc..................................................... len:19 al:1
..................................................uAAUUGCUCCGAAAUACAUCUA..................... len:22 al:1
..................................................AAAUUGCaCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUAuAUCU...................... len:21 al:2
..................................................AAgUUGCUCCGAAAUACAUCUAU.................... len:23 al:3
..................................................cAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUCCGAAAUACAUCg...................... len:21 al:195
..................................................AAAUUuCUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................AAAUaGCUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAa........................ len:19 al:1
..................................................AAAUUGCUCCGAAAUuCAUCUAU.................... len:23 al:1
..................................................AAAUUGCcCCGAAAUACAUCU...................... len:21 al:9
..................................................AAAUUGCUCCGAAAUACAaCU...................... len:21 al:1
..................................................AAAUUGuUCCGAAAUACAUCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAcACAUCU...................... len:21 al:4
..................................................AAAcUGCUCCGAAAUACAUCU...................... len:21 al:5
..................................................AAAUUGCUCCGAAAUAaAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACg......................... len:18 al:1
..................................................AAAUUGgUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................AAAUUGCUCCGAAAUgCAUCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUACcUCU...................... len:21 al:2
..................................................AAAUUGCUCCGAAAUACAUCUcU.................... len:23 al:2
..................................................AgAUUGCUCCGAAAUACAUCUAU.................... len:23 al:1
..................................................AuAUUGCUCCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUGCUCCGAAAUACAcCU...................... len:21 al:5
..................................................uAAUUGCUCCGAAAUACAUCU...................... len:21 al:4
..................................................AAAUUGCUCCGAAAUACgUCU...................... len:21 al:14
..................................................AAAUUGCUCCGgAAUACAUCUAU.................... len:23 al:4
..................................................AAgUUGCUCCGAAAUACAUCU...................... len:21 al:9
..................................................AAAUUGCUCCGAAAUACAUuU...................... len:21 al:3
..................................................AAAUUGCUuCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUcGCUCCGAAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGAAAUACAU........................ len:19 al:5
..................................................AgAUUGCUCCGAAAUACAUCU...................... len:21 al:11
..................................................AAAcUGCUCCGAAAUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUaCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAUa................... len:24 al:11
..................................................AAAUUGCUCCGAAAUACAUCUAUc................... len:24 al:8
..................................................AAcUUGCUCCGAAAUACAUCUA..................... len:22 al:4
..................................................AAAUUGCUCCGAAgUACAUCUAU.................... len:23 al:6
..................................................AAAUUGCUCCGAAAcACAUCUAU.................... len:23 al:8
..................................................AAAUUaCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAUu................... len:24 al:40
..................................................AAAUUGCUCCGAAAUACAUaU...................... len:21 al:8
..................................................AAAUUGCUCCGAAAUACAUCUAg.................... len:23 al:27
..................................................AAAUUGCUCCGAAAUACAc........................ len:19 al:1
..................................................uAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUGCUCuGAAAUACAUCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUACAUCcAU.................... len:23 al:1
..................................................AAAUcGCUCCGAAAUACAUCU...................... len:21 al:5
..................................................AAAUUGCUCCGAAAUgCAUCUAU.................... len:23 al:2
..................................................AAAUUGaUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:1134
..................................................AAAUUGCUCCGAAAUAuAUCUAU.................... len:23 al:2
..................................................AAAgUGCUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAcUUGCUCCGAAAUACAUCU...................... len:21 al:40
..................................................AAAUUGCUCCGAAAUACAUC....................... len:20 al:6
..................................................AAAUUGCUCuGAAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGAAgUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAc.................... len:23 al:198
..................................................AAAUUGCUCCGAAAUACAUCUgU.................... len:23 al:21
..................................................AAAUUGCUCCGuAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGAAAUACAUCUA..................... len:22 al:75
..................................................AcAUUGCUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAUUGuUCCGAAAUACAUCUAU.................... len:23 al:2
..................................................AAAaUGCUCCGAAAUACAUCU...................... len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCc...................... len:21 al:537
..................................................AAAUUGCUCCGAAAUACAcCUAU.................... len:23 al:4
..................................................AAAUUGCUCCGAAAUACAgCU...................... len:21 al:3
..................................................AAAUUGCUCCGAAAUACAUCU...................... len:21 al:2021
..................................................AAAUUGCUCCGAgAUACAUCU...................... len:21 al:1
..................................................AcAUUGCUCCGAAAUACAUCUA..................... len:22 al:1
..................................................AAAUUGCUCCGAAgUACAUCUA..................... len:22 al:1
..................................................AAcUUGCUCCGAAAUACAUCUAU.................... len:23 al:29
..................................................AAuUUGCUCCGAAAUACAUCU...................... len:21 al:2
..................................................AAAUUGCUCCGAAAUACA......................... len:18 al:5
..................................................AAAUUGCUCCGAAAUACAUCa...................... len:21 al:742
..................................................gAAUUGCUCCGAAAUACAUCUAU.................... len:23 al:5
..................................................AAAUUGCUCCGAAAUACgUCUAU.................... len:23 al:10
..................................................AAAUUGCcCCGAAAUACAUCUAU.................... len:23 al:3
..................................................AAAUUGCUCCGgAAUACAUCU...................... len:21 al:8
..................................................AcAUUGCUCCGAAAUACAUCU...................... len:21 al:4
..................................................AAAUUGCUCCGAAAUACAUa....................... len:20 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAcG................... len:24 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAa.................... len:23 al:46
..................................................cAAUUGCUCCGAAAUACAUCU...................... len:21 al:19
..................................................AAAUUGCUCCGAAAUACgUC....................... len:20 al:2
..................................................gAAUUGCUCCGAAAUACAUCU...................... len:21 al:12
...................................................AAUUGCUCCGAAAUACAUCUAc.................... len:22 al:3
...................................................AAUUGCUCCGAAAUACAUCU...................... len:20 al:1
...................................................AAaUGCUCCGAAAUACAUCU...................... len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCc...................... len:20 al:3
...................................................AAUUGCUCCGAAAUACAUCUAU.................... len:22 al:2
...................................................AAUUGCUCCGAAAUACgUCU...................... len:20 al:1
....................................................AUUGCUCCGAAAUACAUCU...................... len:19 al:16
....................................................AUUGCUCCGAAAUACAUCUAU.................... len:21 al:9
....................................................AUUGCUCCGAAAUACAUCa...................... len:19 al:9
....................................................AUUGCUCCGAAAUACAUCc...................... len:19 al:5
....................................................AUUGCUCCGAAAUACAUCUAc.................... len:21 al:2
.....................................................UUGCUCCGAAAUACAUCUAUc................... len:21 al:1
.....................................................UUGCUCCGAAAUACAUCUAU.................... len:20 al:29
.....................................................UUGCUCCGAAAUACAUCUAa.................... len:20 al:3
.....................................................aUGCUCCGAAAUACAUCUAU.................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUuU...................... len:18 al:1
.....................................................UUGCUCCGAAAUACAUgU...................... len:18 al:1
.....................................................UcGCUCCGAAAUACAUCU...................... len:18 al:1
.....................................................UUGCUCCGAAAUACAUCUAUu................... len:21 al:2
.....................................................UUGCUCCGAAAUACAUCa...................... len:18 al:34
.....................................................UUGCUCCGAAAUACAUCUAc.................... len:20 al:2
.....................................................UUGCUCCGAAAUACAUCU...................... len:18 al:83
.....................................................UcGCUCCGAAAUACAUCUAU.................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUCc...................... len:18 al:21
.....................................................UUGCUCCGAAAUACAUCg...................... len:18 al:12
.....................................................UUGCUCCGAAAUACAUCUA..................... len:19 al:1
......................................................UGCUCCGAAAUACAUCUAU.................... len:19 al:1