Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4879.ps
Locus Name: Cluster_4879
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCAa............................................................................. len:21 al:2
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:3
AGGGAGAAUAUUGUCUGGCAaA............................................................................ len:22 al:2
.GGGAGAAUAUUGUCUGGC............................................................................... len:18 al:1
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:8
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:1
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:6
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:3
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:6
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:4
...GAGAAUAUUGUCUGGCAaA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:3
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:1
.....GAAUAUUGUCUGGCgU............................................................................. len:16 al:1
......AAUAUUGUCUGGCgUA............................................................................ len:16 al:3
........UAUUGUCUGGCAUAAGGUGAGCa................................................................... len:23 al:1
..............CUGGCAUAAGGUGAGCUGUGuGA............................................................. len:23 al:1
....................cAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:12
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:2
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:4
......................AGGUGAGCUGUuGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCcGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:12
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:3
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:45
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGA............................................................. len:15 al:4
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCgUAU..................................................... len:23 al:1
......................AGGaGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:5
......................AGGUGAGCUGUGGGAAC........................................................... len:17 al:8
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:2
......................AGGUGAGCUGgGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:12
......................AGGUGAGCUGUGGGAACUCUUAaUAUUU................................................ len:28 al:1
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:16
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:3
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:37
......................AGGUGAuCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:57
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:11
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:4
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUaAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:6
......................AGGgGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:7
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:1
......................AcGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGgGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:14
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:35
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGaUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:2
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:3
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:27
......................AGGUGAGCUGUGGGgACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:7
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:3
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUuUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUaUUA...................................................... len:22 al:1
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:2
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:6
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACgCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCcUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:67
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:18
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:6
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:2
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:46
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:22
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:3
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:4
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:9
......................AaGUGAGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:4
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAcCUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:16
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:26
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:63
......................AGGUGAGCUGUuGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:7
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:11
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:5
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:10
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:1
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:11
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:477
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:1
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:2
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:7
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2451
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:15
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:17
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:4
.......................GGUGAGCUGUGGGAACUa......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:1
.......................uGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACg.......................................................... len:17 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:20
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:2
.......................GGUGAGCUGUGGGAA............................................................ len:15 al:1
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:3
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCa........................................................ len:19 al:1
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCcGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:2
........................GUGAGCUGUGGGAACUCUa....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:6
........................uUGAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUC......................................................... len:17 al:1
.........................UGAGCUGUGGGgACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:1
.........................UGAGCUGUGGGAACUCcUAUUA................................................... len:22 al:1
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:5
.........................UGAGCUGUGGGAACUCa........................................................ len:17 al:3
.........................UGAGCUGUGGGAACUC......................................................... len:16 al:2
...........................AGCUGUGGGAACUCUUuU..................................................... len:18 al:1
............................GCUGUGGGAACUCUUA...................................................... len:16 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:2
............................................UUAUUUAUGAUAUCAGUUCCACa............................... len:23 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:1
........................................................UCAGUUCCACCuGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCAuCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:13
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:12
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:26
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:2
........................................................UCAGcUCCACCAGCUCACCAA..................... len:21 al:1
........................................................aCAGUUCCACCAGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:2
........................................................UCAGUUCCACCgGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
........................................................UCAuUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAcU.................... len:22 al:4
........................................................UCAGUUCCACCAGCUuACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:377
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:9
........................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:2
........................................................UCcGUUCCACCAGCUCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:57
........................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:9
........................................................UCAGUUCCACCAGCU........................... len:15 al:3
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:10
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:16
........................................................UCAGUUCCACCAGCUCgCCA...................... len:20 al:1
........................................................cCAGUUCCACCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAgUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:2
........................................................UCAGUUCCAuCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCc........................... len:15 al:1
........................................................UCAGUUCCACCAGCUCACCAg..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:281
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:57
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:1
........................................................UCAGUUCCACCAGCUCAaCAAU.................... len:22 al:1
........................................................UCgGUUCCACCAGCUCACCAA..................... len:21 al:1
........................................................UCAGUUaCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACCc...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCAgCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:18
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:97
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:5
........................................................UCAGUUCCACCAGCUCACCu...................... len:20 al:3
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:2
........................................................UCAGUUCCACCAGCUCACuAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCgAUA................... len:23 al:3
........................................................UCAGUUCCACCAGCUuACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGuUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:22
........................................................UCAGUUCCACCAuCUCACC....................... len:19 al:1
........................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAuCUCA......................... len:17 al:2
........................................................UCAGUUCCACCAGCcCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUC.......................... len:16 al:2
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:13
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:3
........................................................UCAGUUCCACCAGCUCuCCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCgAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCA......................... len:17 al:2
........................................................UCAGUUCCACCAGCcCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACaAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCgCCAAU.................... len:22 al:1
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:5
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:9
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:10
........................................................aCAGUUCCACCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCcCACCAAUA................... len:23 al:2
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:2
.........................................................CAGUUCCACCAGCUCACCAAUu................... len:22 al:1
.........................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:1
.........................................................CAGUUCCACCAGCUCAgCAAU.................... len:21 al:1
.........................................................CAGUUCCACCAGCUCACCAAU.................... len:21 al:1
..........................................................AGUUCCACCAGCUCACCAAUA................... len:21 al:1
..........................................................AGUUCCACCAGCUCACCA...................... len:18 al:1
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:4
............................................................UUCCACCAGCUCACCAAUc................... len:19 al:1
............................................................UUCCACCAGCUCACCAgUA................... len:19 al:1
............................................................UUCCACCAGCUCACCAAUAU.................. len:20 al:2
............................................................UUCCACCAGCUCACCA...................... len:16 al:1
............................................................UUCCACCAGCUCACCAAUuU.................. len:20 al:1
............................................................UUCCACCAGCUCACCAAc.................... len:18 al:1
............................................................UUCCACCAGCUCACCuAU.................... len:18 al:1