Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000012:6455183-6455276 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_4011.ps
Locus Name: Cluster_4011
UCUCCGUUUCUUAGGUGAGCGGUGAAAUACUCUGACGGAGUCAGCUUCAGUGCACUCCAUCAGAAUAUUUUGCGCUCGCUUAAAGAUUGAUCAG
..((.((((.(((((((((((.(((((((.(((((.(((((..((......))))))).))))).)))))))))))))))))))))).)).... (-37.60)
......................UGAAAUACcCUGACGGAGU..................................................... len:19 al:1
......................UuAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGCUUCAGc........................................... len:29 al:1
......................UGAAAUAuUCUGACGGAGUCAGC................................................. len:23 al:2
......................UGAuAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGuGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGg..................................................... len:19 al:5
......................UGAAAUACUCUGACGGAGUCAGCUUC.............................................. len:26 al:2
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUG.......................................... len:30 al:1
......................UGAAAUACUCUGACGGAc...................................................... len:18 al:1
......................UGAAAUACUuUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUuACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGCUa............................................... len:25 al:9
......................UGAAAUACUCUGgCGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUGu......................................... len:31 al:4
......................UGAAAUACUCUGACGGAGUCAGCUc............................................... len:25 al:1
......................UGAAAUACUuUGACGGAGUCAGC................................................. len:23 al:1
......................cGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:9
......................UGAAAUACUCUGACGGAGUCAGu................................................. len:23 al:124
......................UGuAAUACUCUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAa...................................................... len:18 al:1
......................UGAAAUACUCUGACGGAGUCAGCaU............................................... len:25 al:2
......................UGAAAUACUCUGACGGAGUCuGC................................................. len:23 al:1
......................UGAAAUACUCUGgCGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAuC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGaC.................................................... len:20 al:2
......................UGAAAUACUCUGACaGAGUCAGC................................................. len:23 al:2
......................UGAAAcACUCUGACGGAGUCAGC................................................. len:23 al:4
......................UuAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUu.................................................... len:20 al:7
......................aGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:4
......................UGAAAUACUCUGACGGAu...................................................... len:18 al:3
......................UGAAAUACUCUGACGGAGUCAGCUUu.............................................. len:26 al:5
......................UGAAAUACUCUGACGGAGUCA................................................... len:21 al:5
......................UGAAAUACUCUGACGGAG...................................................... len:18 al:5
......................UGAAAUACUuUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGaCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAG.................................................. len:22 al:121
......................UGAAAUACUCUGACGGu....................................................... len:17 al:6
......................UGAAAUACUCUGACGGAGUCAGg................................................. len:23 al:3
......................aGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAgAUACUCUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUCgGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGgGUC.................................................... len:20 al:1
......................cGAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUa.................................................... len:20 al:25
......................UGAAAUACUCUGACGGA....................................................... len:17 al:44
......................UGAAAUACUCUGACGGAGUCAGCUUCAGU........................................... len:29 al:1
......................UGAAAUAaUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGgAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGgCGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACaGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCgGC................................................. len:23 al:4
......................UGAAAUACUCUGACGaAGUCAGC................................................. len:23 al:4
......................UGAAAUACUCUGACGu........................................................ len:16 al:5
......................UGAAAUACUaUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUC.................................................... len:20 al:169
......................UGAAAUACUCUGACGG........................................................ len:16 al:40
......................UGAAAUACUCUGACGGAGUCcG.................................................. len:22 al:10
......................UGAAAUACUCgGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAu.................................................. len:22 al:3
......................UGAAAUgCUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGaU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAaC................................................. len:23 al:32
......................UGAAAUACUCUGACGGAGUCAc.................................................. len:22 al:8
......................UGgAAUACUCUGACGGAGUC.................................................... len:20 al:2
......................UGAAAUACUCUGACGGAGUCAGCUU............................................... len:25 al:41
......................UGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1078
......................UGAAAUACUCUGACGGcGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGc....................................................... len:17 al:1
......................UGAAAUACUCUGACGGAGc..................................................... len:19 al:9
......................UaAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGAuGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:120
......................aGAAAUACUCUGACGGAGUC.................................................... len:20 al:3
......................UGAAAUACUCUGACGGAGUCAGCg................................................ len:24 al:21
......................UGAAAUACUCUGgCGGAGUC.................................................... len:20 al:4
......................cGAAAUACUCUGACGGAGU..................................................... len:19 al:1
......................UGAAAUACUCUGACGGAGUCAGa................................................. len:23 al:80
......................cGAAAUACUCUGACGG........................................................ len:16 al:1
......................UGAAAUACUCUGACGGAGgC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUCAGCa................................................ len:24 al:87
......................UGAAAUACUCUGACGGAGU..................................................... len:19 al:49
......................UGAAAUACUCUGACG......................................................... len:15 al:11
......................UGAAAUACUCUGACGGAGcCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAaUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGgGUCAGC................................................. len:23 al:7
......................UGAgAUACUCUGACGGAGUCAGC................................................. len:23 al:5
......................UGAAAUACUCUGACGGAGcCAGCU................................................ len:24 al:1
......................UGAAgUACUCUGACGGAGUCAGCU................................................ len:24 al:2
......................UGAAAUACUCUGACGGAGUCAa.................................................. len:22 al:24
......................UGgAAUACUCUGACGGAGUCAGC................................................. len:23 al:8
......................UGAgAUACUCUGACGGAGU..................................................... len:19 al:2
......................UGAAAUACUCUGACGGAGUCAGCc................................................ len:24 al:41
......................UGAAAUACUCcGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGuU................................................ len:24 al:4
......................UGAAAUACUCUGACGGAGa..................................................... len:19 al:3
......................UGAAAUACUCcGACGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACa......................................................... len:15 al:6
......................UGAAAUACUCUGACGGAaU..................................................... len:19 al:1
......................UGAAAUACUCUGACGGAGgCAGC................................................. len:23 al:2
......................UGAAgUACUCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAgUACUCUGACGGAGUC.................................................... len:20 al:4
......................UGAAAUACcCUGACGGAGUCAGC................................................. len:23 al:3
.......................GAAAUACUCUGACGGAGUC.................................................... len:19 al:1
.......................GAAAUACUCUGACGGAGUCAGCU................................................ len:23 al:1
.......................GAAAUACUCUGACGGAGUCAG.................................................. len:21 al:3
........................AAAUACUCUGACGGA....................................................... len:15 al:1
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:29 al:1
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:30 al:5
.............................................UUCAGUGaACUCCAUCAGAAUAUUUUGCG.................... len:29 al:1
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:29 al:13
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCa.................... len:29 al:10
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCc.................... len:29 al:9
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGC..................... len:28 al:2
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:28 al:7
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:29 al:28
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCG.................... len:29 al:3
..............................................UCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:27 al:1
...............................................CAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:27 al:1
................................................AGUGuACUCCAUCAGAAUAUUUUGC..................... len:25 al:2
..................................................UGuACUCCAUCAGAAUAUUUUGC..................... len:23 al:7
..................................................UGuACUCCAUCAGAAUAUUUUGCG.................... len:24 al:1
...................................................GCACUCCAUCAGAAUAUUUUGCc.................... len:23 al:1
...................................................GuACUCCAUCAGAAUAUUUUGCG.................... len:23 al:4
...................................................GuACUCCAUCAGAAU............................ len:15 al:1
...................................................GuACUCCAUCAGAAUAUUUUGC..................... len:22 al:8
...................................................GCACUCCAUCAGAAUAUUUUGCu.................... len:23 al:1
...................................................GCACUCCAUCAGAAUAUUUUGu..................... len:22 al:1
...................................................GCACUCCAUCAGAAU............................ len:15 al:1
...................................................GaACUCCAUCAGAAUAUUUUGC..................... len:22 al:1
....................................................uACUCCAUCAGAAUAUUUUGC..................... len:21 al:31
....................................................uACUCCAUCAGAAUAUUUUGCG.................... len:22 al:7
....................................................CACUCCAUCAGAAUAUUUUGC..................... len:21 al:1
....................................................aACUCCAUCAGAAUAUUUUGCG.................... len:22 al:3
....................................................aACUCCAUCAGAAUAUUUUGC..................... len:21 al:2