Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:10129512-10129606 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1.1-Pmea-sRNAseq-ShortStack-R1-reads-cnidarian_miRBase/ShortStack_out/strucVis/Cluster_1443.ps
Locus Name: Cluster_1443
UUGCUGUUUCAGCUGUAUAUCGAUGUACUUCAGAGCAAUUUUUUUUACAAAAAUUGCUCCGAAAUACAUCUAUGUAACGUUGAAAAUUUAUUGUA
......(((((((..(((((.((((((.(((.(((((((((((.....))))))))))).))).)))))).)))))..))))))).......... (-31.20)
........UCAGCUGUAUAUCGAcGUAC................................................................... len:20 al:1
...................cCGAUGUACUUCAGAGCAAUUUUU.................................................... len:24 al:1
....................CGAUGUACUUCgGAGCAAUUUUU.................................................... len:23 al:7
....................CGAUGUACUUCAGAGCAAUUUa..................................................... len:22 al:3
....................CGAUGUACUUCAGAGCAAUcUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAAUUU...................................................... len:21 al:40
....................CGAUGUACUUCAGAGCAAUUc...................................................... len:21 al:7
....................CGAaGUACUUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUc..................................................... len:22 al:11
....................CGAUGUACUUCAGAGCAAUUUUc.................................................... len:23 al:304
....................CGAUGUACUUCAGAGC........................................................... len:16 al:11
....................CGgUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCAuUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUgU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUUUc................................................... len:24 al:126
....................CGAUGUACUUCAGuGCAAUUUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAAaUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAAUUcUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCgAUU....................................................... len:20 al:1
....................CGAUGUACUUCAGAGCgAU........................................................ len:19 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUUa................................................. len:26 al:1
....................CGAUGUACUUCAGAGCAAUUgUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGaAAUUUUU.................................................... len:23 al:3
....................CGAUGUACUUCAGAGCAA......................................................... len:18 al:5
....................CGAUGUACUUCAGAGCA.......................................................... len:17 al:25
....................CGAUGUACUUCAGAGCAAUUUUUgU.................................................. len:25 al:2
....................CuAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAcUUUUU................................................... len:24 al:4
....................CGAUGUACUUCAGAGCAAUUUUUUUUACAAA............................................ len:31 al:2
....................CGAUGUACUUCAGAGCAAUUUaU.................................................... len:23 al:3
....................CGAUGUACUUCAGAGCAgUUUUUU................................................... len:24 al:2
....................CGAUGUACUUCAGAGCAAUUUUUUUU................................................. len:26 al:1
....................CGAUGUACUUCAGgGCAAUUUUUU................................................... len:24 al:11
....................CGAUGUACUUCAGAGCAuUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUU.................................................. len:25 al:44
....................CGAUGUACUUCAGAGCAAUUUUUg................................................... len:24 al:1
....................CGAUGUACUUCAGAGCg.......................................................... len:17 al:1
....................CGAUGUACUUCAGAGCAAUUUcU.................................................... len:23 al:3
....................CGAUGaACUUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGCAAUUUUgUU.................................................. len:25 al:1
....................CGAUGUACUUCgGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCAAUcUU..................................................... len:22 al:1
....................gGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUACUUCAGAGCAgUUUUU.................................................... len:23 al:5
....................CGAUGUACUUCAGAGCAAUU....................................................... len:20 al:88
....................CGAUGUACUUCAGAGCAAcUUUU.................................................... len:23 al:3
....................CGAUGUACUUCAGAGCgAUUUUUU................................................... len:24 al:2
....................CGgUGUACUUCAGAGCAAUUU...................................................... len:21 al:2
....................CGAUGUACgUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAUGUACUUCAGAGu........................................................... len:16 al:3
....................CGgUGUACUUCAGAGCAAUU....................................................... len:20 al:1
....................CGAgGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAcGUACUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................uGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:3
....................CGAUGUACUaCAGAGCAAUUUUU.................................................... len:23 al:1
....................gGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUgUUU.................................................... len:23 al:2
....................CuAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAGCAAgU....................................................... len:20 al:1
....................gGAUGUACUUCAGAGCAAUU....................................................... len:20 al:1
....................CGAUGUACUUCAGAGCAAUUUgU.................................................... len:23 al:66
....................aGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGuGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUc....................................................... len:20 al:11
....................CGAUGUACUUCAGgGCAAUUUUU.................................................... len:23 al:14
....................CGuUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:1
....................CGAcGUACUUCAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUAaUUCAGAGCAAUUUUU.................................................... len:23 al:2
....................CGAUGUACUUCAGAaCAAUUUUU.................................................... len:23 al:3
....................gGAUGUACUUCAGAGCAAU........................................................ len:19 al:1
....................CGAUGUACUUCAGAGCAAc........................................................ len:19 al:1
....................aGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:7
....................CGAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1082
....................CGAUGUgCUUCAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUACUUCAGAGCgAUUU...................................................... len:21 al:1
....................CGgUGUACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUcCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUg.................................................... len:23 al:5
....................CGAUGUACUUCAGAGCgAUUUUU.................................................... len:23 al:5
....................CGAUaUACUUCAGAGCAAUUUUU.................................................... len:23 al:3
....................CGAUuUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUg...................................................... len:21 al:2
....................CGAUGUACUcCAGAGCAAUUUUU.................................................... len:23 al:5
....................CGAUGUACcUCAGAGCAAUUUUU.................................................... len:23 al:6
....................CGAUGUACUUCgGAGCAAUUUUUUU.................................................. len:25 al:1
....................CGAUGUACUUCAGAGCAAUUUUUUaU................................................. len:26 al:4
....................CGAaGUACUUCAGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUgU................................................... len:24 al:18
....................CGAUGcACUUCAGAGCAAUUUUU.................................................... len:23 al:6
....................CGAUGUACUUCAGAGCAAUUUUcU................................................... len:24 al:1
....................CGAUGUACUUCcGAGCAAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGuAAUUUUUU................................................... len:24 al:2
....................CaAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:19
....................CGAUGUACUUCAGAGCAAUUUUaU................................................... len:24 al:5
....................CGAUGUACaUCAGAGCAAUUUUUU................................................... len:24 al:1
....................uGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:22
....................CGAUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:2791
....................CGAUGUACUUCAGAGCAAUUUUUUa.................................................. len:25 al:14
....................CaAUGUACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUUCgGAGCA.......................................................... len:17 al:1
....................CGAUGUACUUuAGAGCAAUUUUU.................................................... len:23 al:10
....................CGAUGUACUUCAGAGCAAUUUUUUc.................................................. len:25 al:2
....................CGAUGUACUUCAGAcCAAUUUUUU................................................... len:24 al:1
....................CGAUGcACUUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACUUCAGAGCAAU........................................................ len:19 al:24
....................CGAUGUACUUCAGAGCAAUUUU..................................................... len:22 al:123
....................CGAUGUACUUCAGAGCAAUUUUa.................................................... len:23 al:39
....................CaAUGUACUUCAGAGCAAUUUUUU................................................... len:24 al:13
....................CGAUGUgCUUCAGAGCAAUUUUUU................................................... len:24 al:6
....................CGAUGUACUUCAGAGCuAUUUUUU................................................... len:24 al:1
....................CGAUGUACUUCAGAGCAAUUUUUaU.................................................. len:25 al:42
....................CGAUGUACUUCAGAGCAAUUUUUUUUACA.............................................. len:29 al:1
....................CGgUGUACUUCAGAGCAAUUUUU.................................................... len:23 al:15
....................CGAUGUACcUCAGAGCAAUUUU..................................................... len:22 al:1
....................CGAUGUACcUCAGAGCAAUUUUUU................................................... len:24 al:5
....................CGAUGUACUUCAGAGCAAUUUUUa................................................... len:24 al:345
....................CGAUGUACUUCAGAGCAAUUUaUU................................................... len:24 al:1
....................CGAUGUACUUCAGAG............................................................ len:15 al:2
....................CGAUGUACUUCAGAGCAAUa....................................................... len:20 al:2
....................CGAUGUACUUCAGAGCAAUUcUU.................................................... len:23 al:3
....................CuAUGUACUUCAGAGC........................................................... len:16 al:1
....................CGAUGUACUUCAGAGCAAUUgUU.................................................... len:23 al:1
.....................GAUGUACUUCAGAGCAAUUUUUUa.................................................. len:24 al:1
.....................GAUGUACUUCAGAGCAAUUUUUc................................................... len:23 al:2
.....................GAUGUACUUCAGAGCAAUc....................................................... len:19 al:1
.....................GAcGUACUUCAGAGCAAUUUUUU................................................... len:23 al:2
.....................GAUGUACUUCAGAGCAAUUUUU.................................................... len:22 al:8
.....................GAUGUACUUCAGAGCAAUUU...................................................... len:20 al:1
..................................................AAAUUGCUCCGAAAUACAUCUcU...................... len:23 al:7
..................................................AAAUUGCUCCGAAAUACAUCc........................ len:21 al:524
..................................................AAAUUGCUCCGAAAcACAUCU........................ len:21 al:4
..................................................AAAgUGCUCCGAAAUACAUCU........................ len:21 al:2
..................................................uAAUUGCUCCGAAAUACAUCU........................ len:21 al:4
..................................................AAAUUGCUCCGAAAUAuAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAgUACAUCUAU...................... len:23 al:6
..................................................AAAUUGCUCCGAAcUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAc.......................... len:19 al:1
..................................................AAAUUGCUCCGAAAUACAcCU........................ len:21 al:5
..................................................AAAUUGCUCCGAAAUACgUCU........................ len:21 al:15
..................................................AAAUUGCUCCGAAAUACAUCU........................ len:21 al:1984
..................................................AuAUUGCUCCGAAAUACAUCU........................ len:21 al:2
..................................................AAAUUGCUCCGAAAUACAaCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUa......................... len:20 al:1
..................................................AAAUUGCUCCGAAAUAC............................ len:17 al:3
..................................................AAAUUGCcCCGAAAUACAUCU........................ len:21 al:9
..................................................AAAUUGCUCCGAAAUACAUCUAcG..................... len:24 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAc...................... len:23 al:194
..................................................AAAUUGCUCCGgAAUACAUCU........................ len:21 al:8
..................................................uAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAcUUGCUCCGAAAUACAUCUA....................... len:22 al:4
..................................................AAAUUGCUCCGAAAUACAUCcAU...................... len:23 al:1
..................................................cAAUUGCUCCGAAAUACAUCU........................ len:21 al:18
..................................................AAAUUcCUCCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUaGCUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUC......................... len:20 al:7
..................................................AAAUUGCUCCGAAAUgCAUCU........................ len:21 al:3
..................................................gAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:6
..................................................AAAaUGCUCCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAa...................... len:23 al:47
..................................................AAAUUGCUCCGAAAUACAUCUAUa..................... len:24 al:11
..................................................AAAUUGCUCCGAAAUA............................. len:16 al:2
..................................................AAAUUGCUCCGAAAUACgUCUAU...................... len:23 al:10
..................................................AAAUUGgUCCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAcCUAU...................... len:23 al:4
..................................................cAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:6
..................................................AAAUUGCUCCGAAAUACAUCUAUu..................... len:24 al:40
..................................................AAAUUGCUCuGAAAUACAUCUAU...................... len:23 al:3
..................................................AAAUUGCUCCGAAAUAuAUCU........................ len:21 al:4
..................................................AAuUUGCUCCGAAAUACAUCU........................ len:21 al:2
..................................................AAAUUGCUCCGAAAUAaAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAgUACAUCUA....................... len:22 al:1
..................................................AAAUUGCUCCGAAAU.............................. len:15 al:19
..................................................AAAUUGCaCCGAAAUACAUCU........................ len:21 al:3
..................................................AcAUUGCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAaUGCUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUCg........................ len:21 al:194
..................................................AAAUUGCUCCGAAAUACAUCa........................ len:21 al:732
..................................................AAAUUGCUCCGAAAUACAUCUA....................... len:22 al:82
..................................................AAAUUGCUCCGAAAc.............................. len:15 al:4
..................................................gAAUUGCUCCGAAAUACAUCU........................ len:21 al:12
..................................................AAgUUGCUCCGAAAUACAUCUAU...................... len:23 al:3
..................................................AgAUUGCUCCGAAAUACAUCU........................ len:21 al:11
..................................................AAAUcGCUCCGAAAUACAUCUAU...................... len:23 al:3
..................................................AAAcUGCUCCGAAAUACAUCU........................ len:21 al:5
..................................................AAAUUGCUCCGAAAUACcUCU........................ len:21 al:2
..................................................AAAUUGCUaCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACA........................... len:18 al:5
..................................................AAAUUGCUCCGAAAUACAU.......................... len:19 al:5
..................................................AAAUUGCUCCGAAAUACAUuU........................ len:21 al:3
..................................................AAAUUGCUCCGAAAUACAgCU........................ len:21 al:3
..................................................AAAUUGaUCCGAAAUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAgACAUCU........................ len:21 al:1
..................................................AAAUUGCUaCGAAAUACAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACAUCUAg...................... len:23 al:19
..................................................AAAUUGCUCuGAAAUACAUCU........................ len:21 al:3
..................................................AAAUUGCUCCGAAAUACAUCUAU...................... len:23 al:1107
..................................................AAAUUGuUCCGAAAUACAUCU........................ len:21 al:3
..................................................AAAUUGCUCCGuAAUACAUCUAU...................... len:23 al:3
..................................................AAcUUGCUCCGAAAUACAUCUAU...................... len:23 al:27
..................................................AAAUUGCUuCGAAAUACAUCU........................ len:21 al:2
..................................................AAAUUGCcCCGAAAUACAUCUAU...................... len:23 al:3
..................................................AAAUcGCUCCGAAAUACAUCU........................ len:21 al:4
..................................................AcAUUGCUCCGAAAUACAUCU........................ len:21 al:4
..................................................AAAUUGCUCCGgAAUACAUCUAU...................... len:23 al:5
..................................................AAAUUGCUCCGAAAcACAUCUAU...................... len:23 al:8
..................................................uAAUUGCUCCGAAAUACAUCUA....................... len:22 al:1
..................................................AAAUUaCUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACAUCgAU...................... len:23 al:1
..................................................AAAcUGCUCCGAAAUACAUCUAU...................... len:23 al:6
..................................................AAAUUGCUCCGAAAUgCAUCUAU...................... len:23 al:2
..................................................AAAUUGuUCCGAAAUACAUCUAU...................... len:23 al:2
..................................................AAAUUGCUCCGAAAUACgUC......................... len:20 al:2
..................................................AAAUUGCUCCGAAAUACAUCUAUc..................... len:24 al:8
..................................................AAcUUGCUCCGAAAUACAUCU........................ len:21 al:37
..................................................AcAUUGCUCCGAAAUACAUCUA....................... len:22 al:1
..................................................AAAUUGCUCCGAAAUACAa.......................... len:19 al:1
..................................................AAAUUGCUCCGAAAUACAUCUgU...................... len:23 al:21
..................................................AAAUUGCUCCGAAgUACAUCU........................ len:21 al:1
..................................................AAAUUGCUCCGAAAUACAUaU........................ len:21 al:7
..................................................AAAUUGCUCCGAAAUuCAUCUAU...................... len:23 al:1
..................................................AAAUUGCUCCGAAAUACg........................... len:18 al:1
..................................................AAgUUGCUCCGAAAUACAUCU........................ len:21 al:9
...................................................AAUUGCUCCGAAAUACAUCUAU...................... len:22 al:2
...................................................AAUUGCUCCGAAAUACAUCUAc...................... len:22 al:3
...................................................AAUUGCUCCGAAAUACgUCU........................ len:20 al:1
...................................................AAUUGCUCCGAAAUACAUCc........................ len:20 al:3
...................................................AAUUGCUCCGAAAUACAUCU........................ len:20 al:2
...................................................AAUUGCUCCGAAAUACA........................... len:17 al:2
...................................................AAaUGCUCCGAAAUACAUCU........................ len:20 al:1
....................................................AUUGCUCCGAAAUACAUCUAU...................... len:21 al:9
....................................................AUUGCUCCGAAAUACAUCc........................ len:19 al:5
....................................................AUUGCUCCGAAAUACAUCUA....................... len:20 al:1
....................................................AUUGCUCCGAAAUACAUCU........................ len:19 al:16
....................................................AUUGCUCCGAAAUACAUCUAc...................... len:21 al:2
....................................................AUUGCUCCGAAcUACAUCU........................ len:19 al:1
....................................................AUUGCUCCGAAAUACAUCa........................ len:19 al:9
.....................................................UUGCUCCGAAAUACAUCUA....................... len:19 al:1
.....................................................UUGCUCCGAAAUACAUgU........................ len:18 al:1
.....................................................UUGCUCCGAAAUACAUCg........................ len:18 al:12
.....................................................UUGCUCCGAAAUACAUCUAUu..................... len:21 al:2
.....................................................UUGCUCCGAAAUACAUCUAa...................... len:20 al:3
.....................................................UUGCUCCGAAAUACAUCU........................ len:18 al:82
.....................................................UUGCUCCGAAAUACAUCUAU...................... len:20 al:28
.....................................................UUGCUCCGAAAUACAUuU........................ len:18 al:1
.....................................................UUGCUCCGAAAUACAUCa........................ len:18 al:34
.....................................................aUGCUCCGAAAUACAUCUAU...................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUCUAc...................... len:20 al:2
.....................................................UUGCUCCGAAAUACAc.......................... len:16 al:1
.....................................................UUGCUCCGAAAUACAUCUAUc..................... len:21 al:1
.....................................................UcGCUCCGAAAUACAUCU........................ len:18 al:1
.....................................................UcGCUCCGAAAUACAUCUAU...................... len:20 al:1
.....................................................UUGCUCCGAAAUACAUCc........................ len:18 al:21
......................................................UGCUCCGAAAUACAUCUAU...................... len:19 al:1
......................................................UGCUCCGAAAUACAUCa........................ len:17 al:1