Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000026:1154719-1154813 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_6255.ps
Locus Name: Cluster_6255
GUAUAUUGCCACUUUACAAAUGUACUAUGUUCAUGAUCUUGCACUUAAUAGGUAAGAUCAAGUUCAUGGUAUUCUUGUGAUGUGGUUUUUCACUG
((.....(((((.((((((..((((((((..(.(((((((((.((....))))))))))).)..))))))))..)))))).))))).....)).. (-36.20)
....................UGUACUAUGUUCAUGAUCUUaCA.................................................... len:23 al:1
....................UGUACUAUGcUCAUGAUCUUGC..................................................... len:22 al:2
....................UGUACUAUGUUCAUGAUCUUGCACc.................................................. len:25 al:5
....................UGUACUAUGUUCAUGAUCUUGCAC................................................... len:24 al:30
....................UGUACUAUGUUCAUGAUCUUGCACg.................................................. len:25 al:1
....................UGUACUAUGUUCAUGAUC......................................................... len:18 al:7
....................aGUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUU....................................................... len:20 al:7
....................UGUACUAUGUUCAUGAUCUUGCA.................................................... len:23 al:15
....................UGUACUAUGUUCAUGAUCUUaC..................................................... len:22 al:5
....................UGUACUAUGUUCAUGAUCUUGCACa.................................................. len:25 al:3
....................UGUACUAUGUUCAUGAUCUUGCg.................................................... len:23 al:2
....................UGUACUgUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUuAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCa........................................................ len:19 al:1
....................gGUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................cGUACUAUGUUCAUGAUCUUGCAC................................................... len:24 al:1
....................UGUACUAUGUUCAUGAUCUUGa..................................................... len:22 al:11
....................UGUACUAUGUUCAUGAUCUUGCAa................................................... len:24 al:1
....................UGUACUAUGUUCAUGAUCUUGCACU.................................................. len:25 al:10
....................UGUACUAUGUUCAUGAUCU........................................................ len:19 al:7
....................UGUACUAUGUUCAUGAUCc........................................................ len:19 al:1
....................UGUACUAUGUUCAUGAUCUUGCACUUAAUA............................................. len:30 al:1
....................UcUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:2
....................UGUACUAUGUUCAUGAUCUUGCAu................................................... len:24 al:5
....................UGUACUAUGUUCAUGAUCUcGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUUG...................................................... len:21 al:4
....................UGUACUAUGUUCAUGAUCUUGu..................................................... len:22 al:27
....................UGUACUAUGUaCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCg........................................................ len:19 al:2
....................UGUACUAUGUUCAUGAUCUUGCACUU................................................. len:26 al:2
....................UGUACUAUGUUCAUGAUCUc....................................................... len:20 al:1
....................UGUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:141
....................UGUACUAUGUUCAUGAU.......................................................... len:17 al:4
....................UGUACUAUGUUCAUGAUCUUcC..................................................... len:22 al:2
....................UGUACUAUGUUCAUGAUCUUGCu.................................................... len:23 al:1
....................UGUACUAUGUUCAUGAc.......................................................... len:17 al:1
......................UACUAUGUUCAUGAUCUUGaA.................................................... len:21 al:1
......................aACUAUGUUCAUGAUCUUGC..................................................... len:20 al:1
......................UACUAUGUUCAUGAUCUUGC..................................................... len:20 al:4
.........................UAUGUUCAUGAUCUUGCA.................................................... len:18 al:1
............................................UUAAUAGGUAAGAUCAAcUUCAUGGUAUUCU.................... len:31 al:1
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCU.................... len:31 al:12
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCa.................... len:31 al:6
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCc.................... len:31 al:7
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCg.................... len:31 al:2
...................................................GUAAGAUCAAGUUCAUGGUAUUCa.................... len:24 al:1
...................................................cUAAGAUCAAGUUCAUGGUAUUCU.................... len:24 al:1
....................................................UAAGAUCAAGUUCAUGGUAUaCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAUaGUAUUCU.................... len:23 al:8
....................................................UAAGAUCAAGcUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGgUCAUGGUAUUCU.................... len:23 al:6
....................................................cAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:128
....................................................UAAGAUCAAGUUCAUGGUAUUCa.................... len:23 al:3050
....................................................UAAGAUCAAGUUCAUGcUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUcCAUGGUAUUCU.................... len:23 al:29
....................................................UAAGAUuAAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUaCAUGGUAUUCU.................... len:23 al:1
....................................................aAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:90
....................................................UAAGAcCAAGUUCAUGGUAUUC..................... len:22 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUu..................... len:22 al:5
....................................................UAAGgUCAAGUUCAUGGUAUUC..................... len:22 al:4
....................................................UAAGAUCAAGUUCAUGGUAUUCUUc.................. len:25 al:1
....................................................UAAGAUCAAGUUCAUG........................... len:16 al:15
....................................................UAAGAUCAAGUUCAUGGcAUUC..................... len:22 al:5
....................................................UAAGAUCAAGUUuAUGGUAUUCU.................... len:23 al:10
....................................................UAAGAUCAAGUUCAUGGa......................... len:18 al:6
....................................................UAAGAUCcAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAUGGUAUUCUg................... len:24 al:3
....................................................UAAGAUCAAGUUCcUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAUGGUA........................ len:19 al:6
....................................................UAAGAUCAgGUUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:334
....................................................UAAGAUCAAaUUCAUGGUAUUCU.................... len:23 al:5
....................................................UAAGAUCAAGUUCAUGGUAUUCUa................... len:24 al:370
....................................................UAAGAUCAAGUUCAUGGUAUcCU.................... len:23 al:24
....................................................UAAGAUCAAGUUCAUGGUcUUCU.................... len:23 al:1
....................................................UAAGAUCAAuUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGGUuUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCgUGGUAUUCU.................... len:23 al:54
....................................................UAAGAUCAAGgUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGaAUUCU.................... len:23 al:10
....................................................UAAaAUCAAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUcGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUCUU................... len:24 al:32
....................................................UAAGAUCAAGUUCAUGGUAUUa..................... len:22 al:16
....................................................cAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:10
....................................................UAAGAaCAAGUUCAUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUcCAUGGUAUUC..................... len:22 al:1
....................................................UuAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:9
....................................................UAAGAUCAAGUUgAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGuUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUCUc................... len:24 al:5
....................................................UAAGAUCAAGUUCAUGGUAUUuU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCaU................... len:24 al:3
....................................................UAAGAUCAAcUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAaGGUAUUCU.................... len:23 al:10
....................................................UAAGAUCAAGUUCAUGGUgUUC..................... len:22 al:4
....................................................UAAGAUCAAGUUCAUGGUgUUCU.................... len:23 al:53
....................................................UAAGAUCAAGUUCAcGGUA........................ len:19 al:1
....................................................UAAGgUCAAGUUCAUGGUAUUCU.................... len:23 al:41
....................................................UAAGAUCAAGUUCAcGGUAUUCU.................... len:23 al:33
....................................................UAgGAUCAAGUUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUgCAUGGUAUUCU.................... len:23 al:3
....................................................UAAuAUCAAGUUCAUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAUGGU......................... len:18 al:6
....................................................UAAGAUCAAGUUaAUGGUAUUCU.................... len:23 al:3
....................................................aAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:4
....................................................UAAGAUCAAGUUCAUGGUAUUCUUuU................. len:26 al:1
....................................................UAAGAUCAAGUUCgUGGUAUUC..................... len:22 al:3
....................................................UAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:13847
....................................................UAAGAUCAcGUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGGUAc....................... len:20 al:2
....................................................UAAGAUCAAGUUCAUGG.......................... len:17 al:5
....................................................UAAGAcCAAGUUCAUGGUAUUCU.................... len:23 al:53
....................................................UAAGAUCAAGUUCAUGGUAaUCU.................... len:23 al:3
....................................................UAAGAUCgAGUUCAUGGUAUUCU.................... len:23 al:49
....................................................UAAGAUCAAGUUCAcGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUaCAUGG.......................... len:17 al:1
....................................................UAAGAUCAAGUUCAUGGUAUaC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGcAUUCU.................... len:23 al:23
....................................................UAAGAUCAAGUUCAUGGUAUgCU.................... len:23 al:7
....................................................UAAGAUCAAGUUCAUuGUAUUCU.................... len:23 al:7
....................................................UAAGAUCAAGUUCAUGGUAgUCU.................... len:23 al:6
....................................................UAAGAUCgAGUUCAUGGUAUU...................... len:21 al:1
....................................................UAAGAUCAgGUUCAUGGUAUUCU.................... len:23 al:55
....................................................UcAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:8
....................................................UAAGAUCAuGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAUGa.......................... len:17 al:2
....................................................UAAGAUCAAGUUCAUGaUAUUCU.................... len:23 al:12
....................................................UAgGAUCAAGUUCAUGGUAUUCU.................... len:23 al:41
....................................................UAAGAgCAAGUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGuUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAcG........................... len:16 al:1
....................................................UAAGAUCAAGUUCAUGGUAUc...................... len:21 al:5
....................................................UAAGAUCAAGUUCAUGGUAcUCU.................... len:23 al:25
....................................................UAAGAUCAAGUUCAUGGUAU....................... len:20 al:4
....................................................UAuGAUCAAGUUCAUGGUAUUCU.................... len:23 al:5
....................................................UAAGAUCAAGUUCAUGGaA........................ len:19 al:1
....................................................UAAGAUCAAGUUCAUGGUAUcC..................... len:22 al:1
....................................................gAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:2
....................................................UAAGAUCuAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAUGGUAUUCc.................... len:23 al:3447
....................................................UAAGAUCAAGUUCAUGGUAUUaU.................... len:23 al:36
....................................................UgAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:42
....................................................UAAGAUCAAGUUCuUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGcUCAUGGUAUUCU.................... len:23 al:32
....................................................UAAGAUCAAGUUCAUGGaAU....................... len:20 al:1
....................................................UAAGAUCAAGUUCAUGGUcU....................... len:20 al:1
....................................................UAcGAUCAAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAgGGUAUUCU.................... len:23 al:7
....................................................UAAGAUCAAGUUCAUGGUAUUgU.................... len:23 al:9
....................................................UAgGAUCAAGUUCAUGGU......................... len:18 al:1
....................................................UAAGAUaAAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGuUCAAGUUCAUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAU............................ len:15 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCg.................... len:23 al:1085
....................................................UAAGAUCAAGUUCAUGGUAUUg..................... len:22 al:1
....................................................UAAGAUCAAGUUCAgG........................... len:16 al:3
....................................................UAAGAUCAAGUUCAUGGgAUUCU.................... len:23 al:23
....................................................UAAGAUCAAGUUCAUGGUAUU...................... len:21 al:15
.....................................................uAGAUCAAGUUCAUGGUAUUCU.................... len:22 al:2
.......................................................GAUCAAGUUCAUGGUAUUCU.................... len:20 al:1
.......................................................GAUCAAGUUCAUGGUAUUCa.................... len:20 al:1