Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000024:4808666-4808760 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_6115.ps
Locus Name: Cluster_6115
UUUGUACUUACCCCUGCCGUCCAGAACCCAAGAAUCUCGAAGGUUUUUAAAACCUUCAAGGUUCUGGGGUUAUACGGCUUGGGUACAAACACUCU
..(((...(((((..(((((....(((((.(((((((.((((((((...)))))))).))))))).)))))..)))))..)))))...))).... (-42.70)
.UUGUACUUACCCCUGCCGUCC......................................................................... len:21 al:1
.....................CAGAACCCAAGAAUCUCGAAG..................................................... len:21 al:3
.....................CAGAACCCAAGAAUCUCGAA...................................................... len:20 al:2
.....................CAGAACCCAAGAAUCUCGg....................................................... len:19 al:1
.....................CAGAACCCAAGAAUCUCGAAGu.................................................... len:22 al:1
.....................CAGAACCCAAGAAUCUCGAAGG.................................................... len:22 al:1
.....................CAGAACCCAAGAAUCUCGA....................................................... len:19 al:4
......................gGAACCCAAGAAUCUCGAAG..................................................... len:20 al:7
......................AGAACCCAAGAAUCUCGuAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAgGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAc...................................................... len:19 al:2
......................cGAACCCAAGAAUCUCGA....................................................... len:18 al:13
......................AGAACCCAAaAAUCUCGAA...................................................... len:19 al:1
......................AGAgCCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCcCGA....................................................... len:18 al:5
......................AGAACCCuAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCgAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAcUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCGAAGGUUa................................................. len:24 al:1
......................AGAACCCAAGAAcCUCGA....................................................... len:18 al:3
......................AGAACCCAAGAAUCUCGgA...................................................... len:19 al:3
......................AGAACCCAuGAAUCUCGAAG..................................................... len:20 al:1
......................gGAACCCAAGAAUCUCGAA...................................................... len:19 al:10
......................cGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:2
......................AGAACCCAAGAAUCUCGAAGGg................................................... len:22 al:1
......................AGAACCCuAGAAUCUCGAAG..................................................... len:20 al:3
......................AGAACCCAAGAAUCUCGAAaG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUuG........................................................ len:17 al:1
......................AGAgCCCAAGAAUCUCG........................................................ len:17 al:3
......................AGAACCCAAGAAUCg.......................................................... len:15 al:1
......................AGAACCCAAGAAUCUCa........................................................ len:17 al:12
......................AGAACCCAAGgAUCUCGA....................................................... len:18 al:2
......................AGAACCCAgGAAUCUCGA....................................................... len:18 al:4
......................AGAACCCAAGAAUCUCGg....................................................... len:18 al:23
......................AGAACCCAAGAAUCUCGAAG..................................................... len:20 al:724
......................AGAACCCAAGAAUCUCaAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUuUCGAAG..................................................... len:20 al:1
......................AGAACCCAAGAAUCgC......................................................... len:16 al:1
......................AGAACCCAAGAAUCUCGAu...................................................... len:19 al:29
......................gGAACCCAAGAAUCUCGA....................................................... len:18 al:6
......................AGAACCCAAGuAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCGAA...................................................... len:19 al:563
......................AGAACuCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAuAAUCUCGAAG..................................................... len:20 al:1
......................AaAACCCAAGAAUCUCGAAGG.................................................... len:21 al:2
......................AuAACCCAAGAAUCUCGAA...................................................... len:19 al:3
......................AGAACCCgAGAAUCUCGAAG..................................................... len:20 al:1
......................AGAACCCAAGAAUCUCGAAa..................................................... len:20 al:103
......................AaAACCCAAGAAUCUCGAA...................................................... len:19 al:5
......................AGAACCCAAGAAUCgCGAA...................................................... len:19 al:1
......................AcAACCCAAGAAUCUCGA....................................................... len:18 al:1
......................AGgACCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................AGAACCCAAGAAUCUCGAcG..................................................... len:20 al:91
......................cGAACCCAAGAAUCUCGAA...................................................... len:19 al:9
......................AGgACCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCG........................................................ len:17 al:30
......................AGAACCCAAGAAUCUaGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUC......................................................... len:16 al:10
......................AGAACCCAAGAAUCUCGAAGGUUUa................................................ len:25 al:1
......................AGAuCCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................AGAACCCuAGAAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAgUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCcA....................................................... len:18 al:3
......................AGAACCCAAGAAUCU.......................................................... len:15 al:3
......................AGAACCCAAGgAUCUCGAA...................................................... len:19 al:2
......................AGAACCCAAGAgUCUCGAA...................................................... len:19 al:3
......................AGAACCCAAGAAUCUCGAAGuUU.................................................. len:23 al:2
......................cGAACCCAAGAAUCUCG........................................................ len:17 al:1
......................AGAACCCAAGAAUCc.......................................................... len:15 al:1
......................AcAACCCAAGAAUCUCGAAGG.................................................... len:21 al:3
......................AGAAuCCAAGAAUCUCGAAG..................................................... len:20 al:1
......................AaAACCCAAGAAUCUCGA....................................................... len:18 al:2
......................AGAACCCAAGAgUCUCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCcCGAAGG.................................................... len:21 al:4
......................AGAACCCAAGAAUCUCGAAGaU................................................... len:22 al:1
......................AGuACCCAAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGAgG..................................................... len:20 al:5
......................AGAACCCAAGAAcCUCGAAG..................................................... len:20 al:5
......................AGAACCCAAGAAUCUCGu....................................................... len:18 al:29
......................uGAACCCAAGAAUCUCGAAG..................................................... len:20 al:4
......................AGAACCCAAGAAUCUuGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUaUCGAAG..................................................... len:20 al:1
......................AGAACCuAAGAAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGgAUCUCGAAG..................................................... len:20 al:1
......................AGAACCCAAGAAaCUCGA....................................................... len:18 al:1
......................cGAACCCAAGAAUCUCGAAG..................................................... len:20 al:5
......................AGAACCCAAGAAUCcCGAA...................................................... len:19 al:1
......................AGAACCCAgGAAUCUCGAA...................................................... len:19 al:2
......................AGAACCCAAGgAUCUC......................................................... len:16 al:1
......................AGAuCCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCaA....................................................... len:18 al:16
......................AGAgCCCAAGAAUCUCGA....................................................... len:18 al:4
......................AGAACCCAAGAAUCUuGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUuGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCUCGAAGaUU.................................................. len:23 al:1
......................uGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:1
......................AGAACCCAAGAAUCUCGAg...................................................... len:19 al:12
......................AGAACCCAAGAAUCUCGAAc..................................................... len:20 al:25
......................AGAACCCAAGAAUCUaGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCGAuG..................................................... len:20 al:1
......................AGAACuCAAGAAUCUCGA....................................................... len:18 al:2
......................AGAACCCAAGgAUCUCGAAGG.................................................... len:21 al:2
......................AGAACCCAAaAAUCUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCGAAGc.................................................... len:21 al:2
......................AGAACCCAAGAAUCUCGAAGa.................................................... len:21 al:76
......................AGAACCCgAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGcAGG.................................................... len:21 al:2
......................AGAACCuAAGAAUCUCGAA...................................................... len:19 al:1
......................AGAACCCAAGAAUCUCGAAGGa................................................... len:22 al:2
......................AGAACCCAAGAAUCUCGAAGGU................................................... len:22 al:4
......................AGAACCCAAGAAUCUCGAAGu.................................................... len:21 al:9
......................AGAACCCAAGAAUCUCGAAu..................................................... len:20 al:24
......................AGAACCCAgGAAUCUCGAAG..................................................... len:20 al:2
......................AGAACCCAAGAAUCUCGcAG..................................................... len:20 al:1
......................AGAACCCAAGAAUCUCGA....................................................... len:18 al:871
......................AGAACCCAAGAAUCUCGAAGG.................................................... len:21 al:151
......................AGAACCCgAGAAUCUCGA....................................................... len:18 al:3
......................AcAACCCAAGAAUCUCGAAG..................................................... len:20 al:3
......................AGgACCCAAGAAUCUCGAA...................................................... len:19 al:7
......................AGAACCCAAGAAUaUCGA....................................................... len:18 al:1
......................AGAACCCAAGAAUCUCGAAGGc................................................... len:22 al:1
......................AGgACCCAAGAAUCUCGA....................................................... len:18 al:2
......................AGAACCCAAGAAUCUCGc....................................................... len:18 al:3
......................AGAACCCAAGAAUCUCGAcGG.................................................... len:21 al:16
......................AGAACCCAAGAAUCcCGAAG..................................................... len:20 al:2
.......................GAACCCAAGAAUCUCGg....................................................... len:17 al:1
.......................GAACCCAAGAAUCUCGAAc..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGA....................................................... len:17 al:4
.......................GAACCCAAGAAUCcCGAAG..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAAu..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAAGu.................................................... len:20 al:1
.......................GAACCCAAGAAUCUCG........................................................ len:16 al:1
.......................GAACCCAAGAAUCUCGAA...................................................... len:18 al:3
.......................aAACCCAAGAAUCUCGAAG..................................................... len:19 al:1
.......................GAACCCAAGAAUCUCGAAa..................................................... len:19 al:3
.......................GAACCCAAGAAUCUCGAAG..................................................... len:19 al:11
........................cACCCAAGAAUCUCGAAG..................................................... len:18 al:1
........................AACuCAAGAAUCUCGAA...................................................... len:17 al:1
........................AACCCAAGAAUCUCGAAG..................................................... len:18 al:1
.........................ACCCAAGAAUCUCGAAG..................................................... len:17 al:1
.............................AAGAAUCUCGAAGGU................................................... len:15 al:1
....................................................CCUUuAAGGUUCUGGGGUUAUA..................... len:22 al:1
....................................................CCUUCAAGGUUCUGGGGUUAUA..................... len:22 al:9
....................................................CCUUCAAGGUUCUGGGGUUAU...................... len:21 al:2
....................................................CCUUCAAGGUUCUGGGGUUAUc..................... len:22 al:1
....................................................CCUUCAAGGUUCUGGGGUa........................ len:19 al:1
......................................................UUCAAGGUUCUGGGGUUAUuC.................... len:21 al:1
......................................................UUCAAGGUUCUGGGGUUAUAC.................... len:21 al:4
......................................................UUCAAGGUUCUGGGGa......................... len:16 al:1
......................................................UUCAAGGUUCUGGGG.......................... len:15 al:2
......................................................cUCAAGGUUCUGGGGUUAU...................... len:19 al:1
......................................................UUCAAGGUUCUGGGGUU........................ len:17 al:4
......................................................UUCAAGGUUCUGGGGUUAU...................... len:19 al:17
......................................................UUCAAGGUUCUGGGGUUAUACu................... len:22 al:2
......................................................UUCAAGGUUCUGGGGUUAUAu.................... len:21 al:5
......................................................UUCAAGGUUCUGGGGUUAUA..................... len:20 al:19
......................................................UUCAAGGUUCUGGGGUc........................ len:17 al:1
......................................................UUCAAGGUUCUGGGGUUAc...................... len:19 al:2
......................................................UUCAAGGUUCUGGGGUUAUc..................... len:20 al:1
......................................................UUCAAGGUUCUGGGGUUgU...................... len:19 al:2
......................................................UUCAAGGUUCUGGGGUUAUu..................... len:20 al:2
.......................................................UCAAGGUUCUGGGGUUAU...................... len:18 al:1
.......................................................UCAAGGUUCUGGGGUUAUA..................... len:19 al:1
.......................................................UCAAGGUUCUGGGGUUAc...................... len:18 al:1
........................................................CAAGGUUCUGGGGUUAUg..................... len:18 al:1
........................................................CAAGGUUCUGGGGUUAUA..................... len:18 al:1
..........................................................AGGUUCUGGGGUUAc...................... len:15 al:1
..........................................................AGGUUCUGGGGUUAU...................... len:15 al:1
..........................................................................CGGCUUGGGUACAAACACUCU len:21 al:1
..........................................................................CGGCUUGGGUACAAACA.... len:17 al:2