Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7556327-7556421 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_4876.ps
Locus Name: Cluster_4876
GAAAAAUCUUGUCUGGCAUAUGGUGGGCUGUUGGAACUUGUAUUUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGGUGAUAUUAUGCA
.....(((...(((((((((((((((((((.(((((((.(((((.....))))).))))))).))))))))).)))))))))).)))........ (-46.30)
GAAAAAUCUUGUCUGGCAUA........................................................................... len:20 al:1
GAAAAAUCUUGUCUGGCAUAU.......................................................................... len:21 al:2
.AAAAAUCUUGUCUGGCAUAc.......................................................................... len:20 al:1
.AAAAAUCUUGUCUGGCAUAU.......................................................................... len:20 al:3
..AAAAUCUUGUCUGGCAUAU.......................................................................... len:19 al:1
.....cUCUUGUCUGGCAUAUGGUGGGCU.................................................................. len:24 al:1
.......CUUGUCUGGCAUAUGGUGGGCc.................................................................. len:22 al:1
.......CUUGUCUGGCAUAUGGUGGGCU.................................................................. len:22 al:1
....................UGGUGGGCUGUUuGAACUUGUA..................................................... len:22 al:1
.....................GGUGGGCUGUUuGAACUUGUA..................................................... len:21 al:3
.....................GGUGGGCUGUUGGAuCUUGU...................................................... len:20 al:5
.....................GGUGGGCUGUUGGAuCUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAu........................................................... len:15 al:1
.....................GGUGGGCUGUUGGAACUUGUA..................................................... len:21 al:8
.....................GGUGGGCUGUUcGAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUuGAACU......................................................... len:17 al:1
.....................GGUGGGCUGUUuGAACUUGU...................................................... len:20 al:2
..........................................UUUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:30 al:1
..........................................UUUUUAUGAUAUCAGUUCCACCAGCUCAgCA...................... len:31 al:3
..........................................UUUUUAUGAUAUCAGUUCCACCAGCUCACCg...................... len:31 al:4
..........................................UUUUUAUGAUAUCAGUUCCACCAGCUCACCA...................... len:31 al:10
...................................................UAUCAGUUCCACCAGCUCACCA...................... len:22 al:1
.....................................................UCAGUUCCACCAGCUCACCuAU.................... len:22 al:1
.....................................................UCAGUUCCACCAuCUCACCA...................... len:20 al:2
.....................................................UCAGUUCCACCAGCUCAaCAAU.................... len:22 al:1
.....................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:45
.....................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:5
.....................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:24
.....................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:30
.....................................................UCcGUUCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUUCCACCAGCUC.......................... len:16 al:1
.....................................................UCAGUUCCACCAGCUCA......................... len:17 al:4
.....................................................UCAGUUCCACCAGCcCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:4
.....................................................UCAGUUCCACCAGCUCgCCAA..................... len:21 al:1
.....................................................cCAGUUCCACCAGCUCACC....................... len:19 al:1
.....................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:30
.....................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:3
.....................................................UCAGUUCCACCAGCUCg......................... len:17 al:1
.....................................................UCAGUUCCACCAGCUCACCAAUAc.................. len:24 al:1
.....................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:7
.....................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:2
.....................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:2
.....................................................UCAGUUCCACCAGCUCACu....................... len:19 al:1
.....................................................UCAGUUCCACCAaCUCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCgAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGuUCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:7
.....................................................UCAGUUCCACCAGCUCACC....................... len:19 al:12
.....................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:138
.....................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:4
.....................................................UCAGUUCCACCAGCU........................... len:15 al:1
.....................................................UCAGUUCCACCAGCUCACCAAaA................... len:23 al:1
.....................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:4
.....................................................UCAGUUCCACCAGCUCACCAAUAUu................. len:25 al:1
.....................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:2
.....................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCAcU.................... len:22 al:2
.....................................................UCAGUUCCACCgGCUCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:17
.....................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:3
.....................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:157
.....................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:11
.....................................................UCAGUUCCuCCAGCUCACCAAUA................... len:23 al:1
.....................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:9
.....................................................UCAGUUCCACCAGCUCACa....................... len:19 al:1
.....................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
.....................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:3
.....................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:5
......................................................CAGUUCCACCAGCUCACCAAUAU.................. len:23 al:1
......................................................CAGUUCCACCAGCUCAgCAAU.................... len:21 al:1
......................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:1
.........................................................UUCCACCAGCUCACCAAU.................... len:18 al:2
.........................................................UUCCACCAGCUCACCAAUAU.................. len:20 al:2
.........................................................UUCCACCAGCUCACCAAUuU.................. len:20 al:1
.........................................................UUCCACCAGCUCACCAAUA................... len:19 al:4
.........................................................UUCCACCAGCUCACCAAUAUa................. len:21 al:1
.........................................................UUCCACCAGCUCACCAAa.................... len:18 al:1