Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7553282-7553379 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_4874.ps
Locus Name: Cluster_4874
AGGGAGAAUAUUGUCUGGCAUAAGGUGAGCUGUGGGAACUCUUAUUAUUUAUGAUAUCAGUUCCACCAGCUCACCAAUAUGCCAGAUGAUAAUAUGCA
..(.(...((((((((((((((.(((((((((..((((((..(((((....)))))..))))))..)))))))))..))))))))))))))...).). (-47.40)
AGGGAGAAUAUUGUCUGGCAa............................................................................. len:21 al:2
AGGGAGAAUAUUGUCUGGCgUA............................................................................ len:22 al:3
AGGGAGAAUAUUGUCUGGCAaA............................................................................ len:22 al:2
.GGGAGAAUAUUGUCUGGCAaA............................................................................ len:21 al:1
.GGGAGAAUAUUGUCUGGCgUA............................................................................ len:21 al:6
.GGGAGAAUAUUGUCUGGC............................................................................... len:18 al:1
.GGGAGAAUAUUGUCUGGCAUA............................................................................ len:21 al:8
..GGAGAAUAUUGUCUGGCgUA............................................................................ len:20 al:6
..GGAGAAUAUUGUCUGGCgU............................................................................. len:19 al:3
...GAGAAUAUUGUCUGGCAaA............................................................................ len:19 al:1
...GAGAAUAUUGUCUGGCgU............................................................................. len:18 al:2
...GAGAAUAUUGUCUGGCgUA............................................................................ len:19 al:4
...GAGAAUAUUGUCUGGCAUA............................................................................ len:19 al:1
....AGAAUAUUGUCUGGCAUA............................................................................ len:18 al:1
....AGAAUAUUGUCUGGCgUA............................................................................ len:18 al:3
.....GAAUAUUGUCUGGCgU............................................................................. len:16 al:1
......AAUAUUGUCUGGCgUA............................................................................ len:16 al:3
........UAUUGUCUGGCAUAAGGUGAGCa................................................................... len:23 al:1
..............CUGGCAUAAGGUGAGCUGUGuGA............................................................. len:23 al:1
....................cAAGGUGAGCUGUGGGAACUCUUA...................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCUUAaUAU.................................................. len:26 al:2
......................AGGUaAGCUGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCUGUGGGAACUCcUA...................................................... len:22 al:3
......................AGGUGAGCUGUGGGAAuUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUu...................................................... len:22 al:16
......................AGGUGAGCUGUGGGAACUCU........................................................ len:20 al:60
......................AGGUGAGCUGUGGGAACUCcU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACUCcUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAACUCgU....................................................... len:21 al:24
......................AGGUGAGCUGUuGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGGAACUCUUuU..................................................... len:23 al:1
......................uGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................cGGUGAGCUGUGGGAACUCU........................................................ len:20 al:3
......................AGGUGAGCUGUGGGAACUCUUg...................................................... len:22 al:5
......................AGGUGAGCUGUGGGAACUCgUAU..................................................... len:23 al:1
......................AGGUGAGCUGUGGGAACa.......................................................... len:18 al:6
......................AGaUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCc........................................................ len:20 al:17
......................AGGUGAGCUGUGGGAcCUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUaA...................................................... len:22 al:11
......................AGGUGAGCUGcGGGAACUCUUA...................................................... len:22 al:4
......................gGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:2
......................cGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:4
......................AGGUGAGCUGUGGGAACUCUcA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUAa..................................................... len:23 al:17
......................AGGUGAGCUGUGGGAACUCUUAaUA................................................... len:25 al:6
......................AGGUGAGCUGUGGGAACUCg........................................................ len:20 al:10
......................AGGUGAGCUGUGGGAACgCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUaGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACg.......................................................... len:18 al:7
......................AGGUGAGCUGUGGGAACUCUUAUUAU.................................................. len:26 al:1
......................AGGUGAGCUGUGGGgACUCU........................................................ len:20 al:1
......................AGGUGAGCUGUGGaAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAACUCUUAUU.................................................... len:24 al:17
......................AGGUGAGCUGgGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAUc.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACgCUU....................................................... len:21 al:7
......................AGGUGAGCUGUGGGAACUCUUAaUAUUU................................................ len:28 al:1
......................AGGcGAGCUGUGGGA............................................................. len:15 al:1
......................AGGUGAGCUGUGGGAACUCUUAUUc................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUuUUA...................................................... len:22 al:1
......................AGGUGAuCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGgACUCUUAU..................................................... len:23 al:1
......................AGGUGAGCUuUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCaGUGGGAACUCUUA...................................................... len:22 al:2
......................gGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:12
......................AGGUGAGCUGUGGGAACUCUU....................................................... len:21 al:481
......................AGGUGAGCUGUGGGgACUCUU....................................................... len:21 al:8
......................AGGUGAGCUGUGGGAACUCUUAc..................................................... len:23 al:9
......................AGGUGAGCUGUGGGAgCUCUU....................................................... len:21 al:3
......................AGGUGgGCUGUGGGAACUCUUA...................................................... len:22 al:7
......................AaGUGAGCUGUGGGAACUCUU....................................................... len:21 al:8
......................AGGUGAGCUaUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGgGGGAACUCUUAUU.................................................... len:24 al:1
......................AGGUGAGCUGUGGGAgCU.......................................................... len:18 al:1
......................AGGgGAGCUGUGGGAACUCUU....................................................... len:21 al:3
......................AaGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:26
......................AGGUGAGCUGUGGGAACcCUUA...................................................... len:22 al:7
......................AGGUGAGCUGUGGGAACUaUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:2427
......................AGGUGAGCcGUGGGAACU.......................................................... len:18 al:1
......................AGGUGAGCaGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGCUGUGGGAACUCUUAgU.................................................... len:24 al:1
......................AGGUGAGCUGUGaGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUc...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUUAUaA................................................... len:25 al:5
......................AGGUGAGCUGUGGGA............................................................. len:15 al:4
......................AGGUGAGCUGUGGGAACU.......................................................... len:18 al:35
......................AGGUGAGCUGUGGGAACUCaU....................................................... len:21 al:15
......................AGGUGAGCUGUGGGAACc.......................................................... len:18 al:12
......................AGGUGAGCUGUGGGAACUCa........................................................ len:20 al:26
......................AGGUGAGCcGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGgACUCUUA...................................................... len:22 al:8
......................AGGUGAGCUGUGGGAACUCaUA...................................................... len:22 al:5
......................AGGUGAGCUGUGGGAACaCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUc....................................................... len:21 al:74
......................AGGcGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUC......................................................... len:19 al:19
......................AaGUGAGCUGUGGGAACUC......................................................... len:19 al:1
......................AGGUGAGuUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAg..................................................... len:23 al:3
......................AGGUGAGCUGUGGaAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAgCUCUUA...................................................... len:22 al:9
......................uGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUCUa....................................................... len:21 al:43
......................AGGUGAGCUGUGGGAACUu......................................................... len:19 al:4
......................AGGcGAGCUGUGGGAACUCUU....................................................... len:21 al:1
......................AGGUGAGCUGUGGGAA............................................................ len:16 al:3
......................AuGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGgGCUGUGGGAACUCUU....................................................... len:21 al:2
......................AGGUGAGCUGUGGGAAC........................................................... len:17 al:8
......................AGGUGAGCcGUGGGAACUCUUA...................................................... len:22 al:6
......................AGGUGAGCUGUGGGAACUCUg....................................................... len:21 al:10
......................AGGUGAGCUGUGGGAACUCUUAUa.................................................... len:24 al:47
......................AGGUGAGCUGUGGGAACUCUUAUUu................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACUa......................................................... len:19 al:2
......................AGGcGAGCUGUGGGAACUCU........................................................ len:20 al:1
......................AGGUGAGCUGcGGGAACUCUU....................................................... len:21 al:1
......................AGGgGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUaAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAU..................................................... len:23 al:56
......................cGGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:34
......................AGGUGAGCUGUGGGAACUCUUAUUA................................................... len:25 al:1
......................AGGUGAGCUGUGGGAACcCUU....................................................... len:21 al:3
......................AGGaGAGCUGUGGGAACUCUUA...................................................... len:22 al:2
......................AGGUGAGCUGUGGGAACUuU........................................................ len:20 al:2
......................AcGUGAGCUGUGGGAACUCUUA...................................................... len:22 al:1
......................AGGUGAGCUGUGGGAACUCUUAaU.................................................... len:24 al:3
......................AGGUGAGCUGUGGGAACUCUgA...................................................... len:22 al:4
......................AGGUGAGCUGUGGGAACUaU........................................................ len:20 al:2
.......................GGUGAGCUGUGGGAACUC......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUCUUAUa.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACg.......................................................... len:17 al:1
.......................aGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUa......................................................... len:18 al:1
.......................GGUGAGCUGUGGGAACUCa........................................................ len:19 al:1
.......................GGUGAGCUGUGGGAACUCUUAUU.................................................... len:23 al:1
.......................GGUGAGCUGUGGGAACUCU........................................................ len:19 al:2
.......................uGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCUGUGGGAACUCUc....................................................... len:20 al:2
.......................GGUGAGCUGUGGGAACUCUa....................................................... len:20 al:3
.......................GGUGAGCUGUGGGAACUCUU....................................................... len:20 al:1
.......................GGUGAGCcGUGGGAACUCUUA...................................................... len:21 al:1
.......................GGUGAGCUGUGGGAACUCUUA...................................................... len:21 al:20
.......................GGUGAGCUGUGGGAA............................................................ len:15 al:1
........................GUGAGCUGUGGGAACUC......................................................... len:17 al:1
........................uUGAGCUGUGGGAACUCUU....................................................... len:19 al:1
........................GUGAGCUGUGGGAACUCUUA...................................................... len:20 al:7
........................GUGAGCUGUGGGAACUCUa....................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCcUAUUA................................................... len:22 al:1
.........................UGAGCUGUGGGAACUC......................................................... len:16 al:2
.........................UGAGCUGUGGGAACUCUUAUU.................................................... len:21 al:1
.........................UGAGCUGUGGGAACUCUUA...................................................... len:19 al:5
.........................UGAGCUGUGGGgACUCUUA...................................................... len:19 al:1
.........................UGAGCUGUGGGAACUCa........................................................ len:17 al:3
...........................AGCUGUGGGAACUCUUuU..................................................... len:18 al:1
...........................AGCUGUGGGAACUCUa....................................................... len:16 al:1
............................GCUGUGGGAACUCUUA...................................................... len:16 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCA......................... len:29 al:1
............................................UUAUUUAUGAUAUCAGUUCCACCAGCUCACC....................... len:31 al:2
............................................UUAUUUAUGAUAUCAGUUCCACa............................... len:23 al:1
........................................................UCAGUUCCACCAGCaC.......................... len:16 al:1
........................................................aCAGUUCCACCAGCUCACCAAUA................... len:23 al:3
........................................................UCAGUUCCACCAGCUCAgCAA..................... len:21 al:3
........................................................UCAGUUCCACCAGCUCAgCAAUA................... len:23 al:3
........................................................UCAGUUCCACCAGCUC.......................... len:16 al:4
........................................................UCAGUUCCACCAGCcCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAUAUu................. len:25 al:1
........................................................UCAGUUCCACCAGCUCACCAAcA................... len:23 al:6
........................................................UCAGUUCCAuCAGCUCACCAAU.................... len:22 al:2
........................................................UCAaUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UuAGUUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACa....................... len:19 al:2
........................................................UCAGUUCCACCAGCUCACCgAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAuUA................... len:23 al:4
........................................................UCAGUUCCACCAGCUCACCAAUAc.................. len:24 al:2
........................................................UCAGUUCCACCAGCUCAgCAAU.................... len:22 al:40
........................................................UCAGUUCCACCAuCUCACCAA..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCAAUuU.................. len:24 al:3
........................................................UCAGUUCCACCAGCUCACCAu..................... len:21 al:1
........................................................UCAGUUCCACCAGCUCACCgAUA................... len:23 al:2
........................................................UCAGUUCCuCCAGCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAuU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAAgA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAA..................... len:21 al:32
........................................................UCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:7
........................................................UCAGUUCCACCAGCUCACCAAU.................... len:22 al:310
........................................................UCAGUUCCACCAGCUCAgC....................... len:19 al:5
........................................................UCAGUUCCACCAGCUCACCg...................... len:20 al:6
........................................................UCAGUUCCACCAGCUCgCCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGuUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAuCUCACCA...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCAAUA................... len:23 al:302
........................................................UCAGcUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCAg..................... len:21 al:3
........................................................UCAGUUCCACCAGCUCACu....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACg....................... len:19 al:1
........................................................UCAGcUCCACCAGCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCA......................... len:17 al:1
........................................................UCAGUUCCACCAGCUCAgCA...................... len:20 al:9
........................................................UCAGUUCCACCAuCUCACCAAU.................... len:22 al:22
........................................................UCAGUUCCACCAGCa........................... len:15 al:1
........................................................cCAGUUCCACCAGCUCACCAAU.................... len:22 al:5
........................................................UCAGUUCCACCAuCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACCAAa.................... len:22 al:7
........................................................UCAGUUCCACCAGCUCACCAAUu................... len:23 al:82
........................................................UCAGUUCCACCAGCUCACCAgU.................... len:22 al:8
........................................................UCAGUUCCACCAGCUCACCc...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCACCA...................... len:20 al:48
........................................................UCAGUUCCACCAGCUCACCAAg.................... len:22 al:9
........................................................UCAGUUCCACCAuCUCA......................... len:17 al:1
........................................................UCAGUUCCACCAGCUCu......................... len:17 al:1
........................................................UCAGUUCCACCAGCUCACCAAc.................... len:22 al:54
........................................................UCgGUUCCACCAGCUCACCA...................... len:20 al:1
........................................................cCAGUUCCACCAGCUCACCAAUA................... len:23 al:6
........................................................cCAGUUCCACCAGCUCACCAAUAU.................. len:24 al:1
........................................................UCAGUUCCACCAGCUCACaAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAAUAUc................. len:25 al:1
........................................................UCAGUUCCACCgGCUCACCAAU.................... len:22 al:2
........................................................UCAGUUCCACCAGCUCACCAAUg................... len:23 al:1
........................................................aCAGUUCCACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAuCUCACC....................... len:19 al:3
........................................................UCAGUUCCACCAGCUCACCAgUA................... len:23 al:1
........................................................UCAGUUCCACCAGCUCACC....................... len:19 al:14
........................................................UCAGUUCCACCAaCUCACCAAUA................... len:23 al:1
........................................................UCAGUUCCgCCAGCUCACCAAU.................... len:22 al:3
........................................................UCAGUUCCACCAGCUCACCAAUc................... len:23 al:19
........................................................UCAGUUCCACCAGCaCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCUCACCu...................... len:20 al:1
........................................................UCAGUUCCACCAGCUCgCCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAGCc........................... len:15 al:1
........................................................UCAGUUCCACCAGCcCACCAAU.................... len:22 al:3
........................................................UCAGUUCuACCAGCUCACCAAU.................... len:22 al:1
........................................................UCAGUUCCACCAaCUCACCAA..................... len:21 al:2
........................................................UCAGUUCCACCAGCUCACCAcU.................... len:22 al:4
.........................................................CAGUUCCACCAGCUCACCAAU.................... len:21 al:1
.........................................................CAGUUCCACCAGCUCACCAAUA................... len:22 al:2
...........................................................GUUCCACCAGCUCACCAAUA................... len:20 al:1
............................................................UUCCACCAGCUCACCAAUA................... len:19 al:5
............................................................UUCCACCAGCUCACCA...................... len:16 al:1
............................................................UUCCACCAGCUCACCAAUAU.................. len:20 al:1
............................................................UUCCACCAGCUCACCAAc.................... len:18 al:1
............................................................UUCCACCAGCUCACCAAUu................... len:19 al:1
............................................................UUCCACCAGCUCACCAAU.................... len:18 al:2
............................................................UUCCACCAGCUCACCAAa.................... len:18 al:1