Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000001:1459402-1459496 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_429.ps
Locus Name: Cluster_429
UUGACUUUGUUUGGUUUUUACCUGCCUCUUGUUCUUCUUCCAUAUUCAUCUUGAAAGAAGUGCAAGUGGUAGAGAAAUACCAAACUGAAAUGCAU
........(((((((.(((..(((((.(((((.((((((.((.........)).)))))).))))).)))))..))).))))))).......... (-32.20)
....................CCUGCCUCUUGUUCUUCUUCCA..................................................... len:22 al:1
....................CCUGCCUCUUGUUCUcCUUCCA..................................................... len:22 al:2
....................CCUGCCUCUUGUUCUUCUUCCg..................................................... len:22 al:1
....................CCUGCCUCUUGUUCUUCUUCC...................................................... len:21 al:1
......................UGCCUCUUGUUCUUCUUCu...................................................... len:19 al:1
......................UGCCUCUUGUUCUUCUUCCA..................................................... len:20 al:3
...........................CUUGUUCUUCUUCCAUAUUCAUCUU........................................... len:25 al:1
.................................................CUUGAAAGAAGUGCAAGUGGUAGAGA.................... len:26 al:2
..................................................UUGAAAGAAGUGCAAGUGGUAGA...................... len:23 al:6
..................................................UUGAAAGAAGUGCAAGUGGUAGAG..................... len:24 al:1
...................................................UGAAAGAAGUGCAAGUGGUAG....................... len:21 al:5
...................................................UGAAAGAAGUGCAAGUGGc......................... len:19 al:2
...................................................UGAAAGAAGUGCAAGUGGUAGAG..................... len:23 al:11
...................................................UGAAAGAAGUGCAAGUGGUAGc...................... len:22 al:2
...................................................UGAAAGAAGUGCAAGUGGUAGcG..................... len:23 al:1
...................................................UGAAAGAAGUGCAAGUGGU......................... len:19 al:5
...................................................UGAAAGAAGUGCAAGUGGUA........................ len:20 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAGu.................... len:24 al:1
...................................................UGAAAGAAGUGCAAGUGGUAa....................... len:21 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGA...................... len:22 al:35
...................................................UcAAAGAAGUGCAAGUGGUAGAGA.................... len:24 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAa..................... len:23 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAGA.................... len:24 al:1
....................................................cAAAGAAGUGCAAGUGGUAGAGA.................... len:23 al:5
....................................................cAAAGAAGUGCAAGUGGUAG....................... len:20 al:2
.....................................................AAAGAAGUGCAAGUGGcAG....................... len:19 al:5
.....................................................AAAGgAGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCgAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGUGGUAGg...................... len:20 al:1
.....................................................AAAGgAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGAuA.................. len:24 al:3
.....................................................AAAGAAGUGCAcGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGuAAGUGGUAGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCAAGUGGUAGAGu.................... len:22 al:266
.....................................................gAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:12
.....................................................AAAGAAGUGCAAGUGGUAGAaA.................... len:22 al:1
.....................................................AAAGAAGUGCAAuUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUuCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAAu.................. len:24 al:1
.....................................................AAuGAAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAG..................... len:21 al:208
.....................................................AgAGAAGUGCAAGUGGUAGAGA.................... len:22 al:6
.....................................................AAAGAAGUGCAAGUGGcAGAGAA................... len:23 al:1
.....................................................AAAGAAGUGCgAGUGGUAGAGA.................... len:22 al:12
.....................................................AAAGAAGUGCAAGaGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAGA...................... len:20 al:43
.....................................................AAAGgAGUGCAAGUGGU......................... len:17 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAcA.................... len:22 al:4
.....................................................AAcGAAGUGCAAGUGGUAG....................... len:19 al:12
.....................................................AAAGAAGUGuAAGUGGU......................... len:17 al:1
.....................................................AAAGAAGUaCAAGUGGUAGAG..................... len:21 al:28
.....................................................AAAGAAGUGCAAGUGGg......................... len:17 al:4
.....................................................AAAGuAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAcGAAGUGCAAGUGGU......................... len:17 al:5
.....................................................AAAGAAGUGCAAGUGGUAGgGAA................... len:23 al:1
.....................................................AAAGAAGUcCAAGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGUGCAAGUGGUgG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGcGGUAGAGA.................... len:22 al:2
.....................................................AcAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................uAAGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAgGUGGUAGAGA.................... len:22 al:3
.....................................................AAAGAAGUGCAAGUGGa......................... len:17 al:7
.....................................................AAAGAAGUGCAAGUGGgAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGcGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCgAGUGGUAGAGAA................... len:23 al:1
.....................................................AAAGAAGUGCAAGUGGUAGuGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAuAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUA........................ len:18 al:15
.....................................................AAAGAAGUGCAAGgGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAu....................... len:19 al:12
.....................................................AAAGAAGUGCAAGUGG.......................... len:16 al:1
.....................................................AAAGAAGUGCAAGUGGUAc....................... len:19 al:16
.....................................................AAAGAAGUGCAAGUGGUAGAGAc................... len:23 al:2
.....................................................AAAGAAGUGCAAGUGGUcG....................... len:19 al:44
.....................................................gAAGAAGUGCAAGUGGUAGA...................... len:20 al:1
.....................................................AAAGAgGUGCAAGUGGUAGAGA.................... len:22 al:5
.....................................................AAAGAAGUGCAAGUGGcAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGaAGAGA.................... len:22 al:1
.....................................................AcAGAAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAc..................... len:21 al:8
.....................................................AgAGAAGUGCAAGUGGUA........................ len:18 al:1
.....................................................AAAGAAGUGCAuGUGGUAGAGA.................... len:22 al:1
.....................................................uAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAu..................... len:21 al:5
.....................................................cAAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AcAGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAgGAAGUGCAAGUGGUAGAGA.................... len:22 al:16
.....................................................uAAGAAGUGCAAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAa..................... len:21 al:51
.....................................................AAAGAAGUGCAcGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGaGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGcGCAAGUGGU......................... len:17 al:1
.....................................................AAAaAAGUGCAAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUAa....................... len:19 al:60
.....................................................AAAGAAGUGCAAGUGGgA........................ len:18 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAu................... len:23 al:14
.....................................................gAAGAAGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUaCAAGUGGUAGA...................... len:20 al:73
.....................................................AAAGAAGUGCAAGUGGUAGAGc.................... len:22 al:62
.....................................................AAAGAAGUGCAAGUGGUAGAGAA................... len:23 al:13
.....................................................AAAGAAGUGCAAGUaGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAaAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUuGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGgGG.......................... len:16 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGAAA.................. len:24 al:1
.....................................................cAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:17
.....................................................AAAGAAGUGCAAGUuGU......................... len:17 al:1
.....................................................AAAGAAGUGCAAGUGGUAGcG..................... len:21 al:8
.....................................................AAcGAAGUGCAAGUGGUAGAGA.................... len:22 al:31
.....................................................AAAGAAGUGCAAGcGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGcAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGc......................... len:17 al:21
.....................................................AAAGAAGUGCAAGUGGUAGgG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:1677
.....................................................AAAGAAGUGCuAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUcGAG..................... len:21 al:3
.....................................................AAAGAAGUGCAAGUGGUAGAGg.................... len:22 al:62
.....................................................AAAGAAGcGCAAGUGGUAGAGA.................... len:22 al:6
.....................................................AAAGAAGUGCAAGUGGU......................... len:17 al:72
.....................................................AAAGAAGUGCAAGUGGaAG....................... len:19 al:3
.....................................................AAAGAAGUGCcAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAGgGA.................... len:22 al:2
.....................................................AAAGAAGUGCgAGUGGUAGAG..................... len:21 al:1
.....................................................AAgGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGUGGUAG....................... len:19 al:287
.....................................................AAcGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAg................... len:23 al:1
.....................................................AAAGAAGUuCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUgGAGA.................... len:22 al:7
......................................................AAGAAGUGCAAGUGGUAGAGA.................... len:21 al:3
.......................................................AGAAGUGCAAGUGGUAGAa..................... len:19 al:1
........................................................GAAGUGCAAGUGGUAGAGA.................... len:19 al:1
.........................................................AAGUGCAAGUGGUAGAGA.................... len:18 al:1