Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000012:6455183-6455276 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_4008.ps
Locus Name: Cluster_4008
UCUCCGUUUCUUAGGUGAGCGGUGAAAUACUCUGACGGAGUCAGCUUCAGUGCACUCCAUCAGAAUAUUUUGCGCUCGCUUAAAGAUUGAUCAG
..((.((((.(((((((((((.(((((((.(((((.(((((..((......))))))).))))).)))))))))))))))))))))).)).... (-37.60)
......................UGAAAUACUCUGAuGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAc.................................................. len:22 al:8
......................UGAAAUACUCUGACGGAGcCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGU..................................................... len:19 al:49
......................UGAAAUACcCUGACGGAGU..................................................... len:19 al:1
......................UGgAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUAuUCUGACGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGgGUC.................................................... len:20 al:1
......................UGgAAUACUCUGACGGAGUC.................................................... len:20 al:2
......................UGAAAUACUCUGACa......................................................... len:15 al:6
......................UGAAAUACUCUGACGGA....................................................... len:17 al:44
......................UGAAAUACUaUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGcCAGCU................................................ len:24 al:1
......................cGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:9
......................UGAAAUACUCUGACGGu....................................................... len:17 al:6
......................cGAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGu........................................................ len:16 al:5
......................UGAAAUACUCUGACGGAGUCAGa................................................. len:23 al:80
......................UGAAAUACUCUGACGGAGaCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGc..................................................... len:19 al:9
......................UGAAAUACUCUGACaGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGgCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAGCUUCAGU........................................... len:29 al:1
......................UGAAAUACUCUGACGGAGgC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAa...................................................... len:18 al:1
......................UGAAAUACUCUGACGGAaU..................................................... len:19 al:1
......................aGAAAUACUCUGACGGAGUC.................................................... len:20 al:3
......................UGAAAUACUCUGACGGAGUCAaC................................................. len:23 al:32
......................UGAAAUACUCUGACGGAGUCAGCc................................................ len:24 al:41
......................UGAAAUACUCUGACGGAG...................................................... len:18 al:5
......................UGAAAUACUCUGACGGAGUCAGaU................................................ len:24 al:1
......................UGAgAUACUCUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGaAGUCAGC................................................. len:23 al:4
......................UGAAAUACUCcGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCgGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1078
......................UGAAAUACUCUGACGGAGUCAGg................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAu.................................................. len:22 al:3
......................UGAAAUACUCUGACGGAGUCcG.................................................. len:22 al:10
......................UaAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACaGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCgGC................................................. len:23 al:4
......................UGAAAUACUCgGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGuU................................................ len:24 al:4
......................UGAAAUACUCUGACGGAGUu.................................................... len:20 al:7
......................cGAAAUACUCUGACGGAGU..................................................... len:19 al:1
......................UGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:120
......................UGAAAUACUCUGACGGAGg..................................................... len:19 al:5
......................UuAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGaC.................................................... len:20 al:2
......................UGAAAUACUCUGACGGuGUCAGC................................................. len:23 al:1
......................UGAAgUACUCUGACGGAGUCAGCU................................................ len:24 al:2
......................UGAAAUACUCUGACGGAaUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAG.................................................. len:22 al:121
......................cGAAAUACUCUGACGG........................................................ len:16 al:1
......................UGAAAUACUCUGACGG........................................................ len:16 al:40
......................UGAAAUACUuUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUC.................................................... len:20 al:169
......................UGAAAUACUCUGACGGAGUCAGu................................................. len:23 al:126
......................UGAAAUACUCUGACGGAGUCAGCUc............................................... len:25 al:1
......................UGAAAUACUCUGACGGAGa..................................................... len:19 al:3
......................UGAAAUACUCUGACGGAGUCAGCUUu.............................................. len:26 al:5
......................UuAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUCAGCaU............................................... len:25 al:2
......................UGAAAUACUCUGACGGAGUCAGCg................................................ len:24 al:21
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUGu......................................... len:31 al:4
......................UGgAAUACUCUGACGGAGUCAGC................................................. len:23 al:8
......................UGAAAUACcCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACG......................................................... len:15 al:11
......................aGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:4
......................UGAAAUAaUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAgUACUCUGACGGAGUC.................................................... len:20 al:4
......................UGAAAUACUCUGACGGAGUCAGCUUC.............................................. len:26 al:2
......................UGAAAUACUCUGACGGgGUCAGC................................................. len:23 al:7
......................aGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUuACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUgCUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAgAUACUCUGACGGAGU..................................................... len:19 al:2
......................UGAAAUACUCUGACGGc....................................................... len:17 al:1
......................UGAuAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUG.......................................... len:30 al:1
......................UGAAAUACUuUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGcGUCAGC................................................. len:23 al:2
......................UGAgAUACUCUGACGGAGUCAGC................................................. len:23 al:5
......................UGAAAUACUCUGgCGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUCAGCUa............................................... len:25 al:9
......................UGAAAUACUCUGACGGAc...................................................... len:18 al:1
......................UGAAAUACUCUGACGGAGUCAGCUU............................................... len:25 al:41
......................UGAAAUACUCUGACGGAGUCuGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGCUUCAGc........................................... len:29 al:1
......................UGAAAUACUCUGACGGAGUCA................................................... len:21 al:5
......................UGAAAUACUCUGACGGAu...................................................... len:18 al:3
......................UGAAAUACUCUGgCGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAGCa................................................ len:24 al:87
......................UGAAAUACUCUGACGGAGUa.................................................... len:20 al:25
......................UGuAAUACUCUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGgCGGAGUC.................................................... len:20 al:4
......................UGAAAUACUuUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAcACUCUGACGGAGUCAGC................................................. len:23 al:4
......................UGAAAUACUCUGACGGAGUCAuC................................................. len:23 al:1
......................UGAAgUACUCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAa.................................................. len:22 al:24
......................UGAAAUACUCcGACGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGgCGGAGUCAGCU................................................ len:24 al:1
.......................GAAAUACUCUGACGGAGUCAGCU................................................ len:23 al:1
.......................GAAAUACUCUGACGGAGUC.................................................... len:19 al:1
.......................GAAAUACUCUGACGGAGUCAG.................................................. len:21 al:3
........................AAAUACUCUGACGGA....................................................... len:15 al:1
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:30 al:5
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:29 al:1
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCc.................... len:29 al:9
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCG.................... len:29 al:3
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:28 al:7
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGC..................... len:28 al:2
.............................................UUCAGUGaACUCCAUCAGAAUAUUUUGCG.................... len:29 al:1
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:29 al:28
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:29 al:13
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCa.................... len:29 al:10
..............................................UCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:27 al:1
...............................................CAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:27 al:1
................................................AGUGuACUCCAUCAGAAUAUUUUGC..................... len:25 al:2
..................................................UGuACUCCAUCAGAAUAUUUUGC..................... len:23 al:7
..................................................UGuACUCCAUCAGAAUAUUUUGCG.................... len:24 al:1
...................................................GaACUCCAUCAGAAUAUUUUGC..................... len:22 al:1
...................................................GCACUCCAUCAGAAUAUUUUGu..................... len:22 al:1
...................................................GCACUCCAUCAGAAUAUUUUGCu.................... len:23 al:1
...................................................GuACUCCAUCAGAAU............................ len:15 al:1
...................................................GuACUCCAUCAGAAUAUUUUGC..................... len:22 al:8
...................................................GCACUCCAUCAGAAUAUUUUGCc.................... len:23 al:1
...................................................GuACUCCAUCAGAAUAUUUUGCG.................... len:23 al:4
...................................................GCACUCCAUCAGAAU............................ len:15 al:1
....................................................CACUCCAUCAGAAUAUUUUGC..................... len:21 al:1
....................................................aACUCCAUCAGAAUAUUUUGC..................... len:21 al:2
....................................................uACUCCAUCAGAAUAUUUUGCG.................... len:22 al:7
....................................................uACUCCAUCAGAAUAUUUUGC..................... len:21 al:31
....................................................aACUCCAUCAGAAUAUUUUGCG.................... len:22 al:3