Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000010:8012916-8013008 plus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3700.ps
Locus Name: Cluster_3700
UAUGCAGUAAGUUUUGUGUUUUUACUUCAAUGUUAUCGGUUUGUUUAAAACGAACCGAUAACAUUGAAGUUAAAACACAAAACUUGUAAACAA
.......(((((((((((((((.((((((((((((((((((((((...)))))))))))))))))))))).)))))))))))))))....... (-49.00)
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....................UUUACUUCAAUGUUAUCGGUUUGg................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUU................................................... len:22 al:5
....................UUUACUUCAAUGUUAcCGGUUUGU................................................. len:24 al:1
....................UUUACUUCAAcGUUAUCGGUUUGU................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUgUGU................................................. len:24 al:1
....................UUUACUUCAAUGUUAUCGGUUUGc................................................. len:24 al:15
....................UUUACUUCAAUGUUAUCGGUUUGa................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:62
....................UUUACUUCAAUGUUAUCGGUUa................................................... len:22 al:1
....................UUUACUUCAAUGUUAUCGaUUUG.................................................. len:23 al:1
....................UUUACUUCAAUGUgAUCGGUUUGU................................................. len:24 al:2
....................cUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGaUUUGU................................................. len:24 al:11
....................UUUACUUCAAUGUUAUCGGUUc................................................... len:22 al:1
....................UUUACUUCAAUGUUAUCGGUUUGUU................................................ len:25 al:2
.....................UUACUgCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUaAUCGGUUUGU................................................. len:23 al:2
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.....................UUcCUUCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUAUCGGcUUGUU................................................ len:24 al:1
.....................UUACUUCgAUGUUAUCGGUUUGU................................................. len:23 al:27
.....................UUACUUCAcUGUUAUCGGUUUGU................................................. len:23 al:1
.....................UUACaUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUaAUCGGUUUGUU................................................ len:24 al:1
.....................UUACcUCAAUGUUAUCGGUUUGU................................................. len:23 al:25
.....................UUACUUCAAUGcUAUCGGUUUGU................................................. len:23 al:18
.....................UUACUUCAAUGUUAUCGGUg.................................................... len:20 al:1
.....................UUACUUCAAUGUUAUCGaUUUGU................................................. len:23 al:1026
.....................UUACUUCAAUGUUAUCGGUcUGU................................................. len:23 al:68
.....................UaACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:7
.....................UUACUUCAAUGUUAUCGGUUUGUUg............................................... len:25 al:1
.....................UUACUUCgAUGUUAUCGGUUUGUU................................................ len:24 al:5
.....................UUACUUCAAgGUUAUCGGUUUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGUcUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGUUUGUUc............................................... len:25 al:3
.....................UUACUUCAAUGUUAUCGGUgUGU................................................. len:23 al:11
.....................UUACUUCuAUGUUAUCGGUUUGU................................................. len:23 al:3
.....................UUACUUCAAUGUUgUCGGUUUGUU................................................ len:24 al:4
.....................UUACUUCAAUGUUAcCGGUUUGUU................................................ len:24 al:5
.....................UUACUUCAgUGUUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUUCAAUGUUAUCGGUUUGUc................................................ len:24 al:174
.....................UUACUUCAAUGUcAUCGGUUUGUU................................................ len:24 al:2
.....................UUACUUCAAUGUUAUCGGUUUGUg................................................ len:24 al:20
.....................UUACUUCAAUGUUAUCaGUUUGU................................................. len:23 al:11
.....................UUACUUCAAUGUUAUaGGUUUGU................................................. len:23 al:3
.....................UUACUUCAAUGUUAUCGGUUUGgU................................................ len:24 al:7
.....................UUACUUCAAgGUUAUCGGUUUGU................................................. len:23 al:6
.....................UUACUUCAAUGUUAUCGGc..................................................... len:19 al:4
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.....................UUACUUCAAUGUUAUCGGUU.................................................... len:20 al:16
.....................UUACUaCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUAUCGGcUUGU................................................. len:23 al:20
.....................UUACUUCAAUGUUAUCGGUUUGUa................................................ len:24 al:107
.....................UUACUUCAAUGUUAUCGGUUUGUUU............................................... len:25 al:37
.....................UUACUUCAAUGUUAUCGG...................................................... len:18 al:1
.....................UUACUUCAAUGUUAUCGGUUUaU................................................. len:23 al:39
.....................UcACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:7
.....................UUACUUCAAUGUUAUCGGUUcGU................................................. len:23 al:5
.....................UUACUUCAAUGUUAUCGGUUUGc................................................. len:23 al:1700
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.....................UUACUUCAAUGUUAUCGaUUUGUU................................................ len:24 al:1
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.....................UUACUUCAAUGUUAcCGGUUUGU................................................. len:23 al:19
.....................UUACUUCAgUGUUAUCGGUUUGUUU............................................... len:25 al:1
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.....................UUACUUCAAUGUUAUCGGUUUc.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGUc.................................................... len:20 al:1
.....................UUACUUCAAUGUcAUCGGUUUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGUUUGUUa............................................... len:25 al:59
.....................UUACUUCAAUGUUAUCGGUUUa.................................................. len:22 al:8
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.....................UUACUUCAAUGUUAUCGGUUU................................................... len:21 al:20
.....................UUACUUCAAUGUUgUCGGUUUGU................................................. len:23 al:23
.....................UUACUUCcAUGUUAUCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUaUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUuAAUGUUAUCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUUUGa................................................. len:23 al:366
.....................UUACUUCAAUGUUAUCGGUUUG.................................................. len:22 al:61
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.....................UUgCUUCAAUGUUAUCGGUUUG.................................................. len:22 al:1
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.....................UUACUUCAAUGUUAUCGGUUUGUaU............................................... len:25 al:1
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.....................UUACUcCAAUGUUAUCGGUUUGU................................................. len:23 al:18
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.....................UUACUUCAAUGUUAUCGGUUUuU................................................. len:23 al:3
.....................UUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:6673
.....................UUACUUCAgUGUUAUCGGUUUGU................................................. len:23 al:23
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.....................UUgCUUCAAUGUUAUCGGUUUGU................................................. len:23 al:21
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.....................cUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:59
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.....................UUACcUCAAUGUUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUcCAAUGUUAUCGGUUUGUUU............................................... len:25 al:1
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.....................UUACUUCAAUGUUAUCGGUUUGUgU............................................... len:25 al:1
.....................UUACUUCAAUGUUAUCGGcUU................................................... len:21 al:1
.....................UUACaUCAAUGUUAUCGGUUUGU................................................. len:23 al:3
.....................UUACUUCAAUGUUAUCGcUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUUaGU................................................. len:23 al:1
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.....................UUACUUCAAUGUUAUCGGU..................................................... len:19 al:3
.....................UUACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:639
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.....................UcACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGUUUGg................................................. len:23 al:547
.....................UUACUUCAAUGUUAUCGGUUgGU................................................. len:23 al:13
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......................gACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:3
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......................UACUUCAAUGUUAUCGGUg.................................................... len:19 al:1
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......................UACUUCAAUGUUAUCGGU..................................................... len:18 al:6
......................UACUUCAAUGUUAUCGGUUcGUU................................................ len:23 al:1
......................UACUUCAAUGUUAUCGGUUU................................................... len:20 al:52
......................UACUUCAAUGUUAUCGGgUUGU................................................. len:22 al:3
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......................UACaUCAAUGUUAUCGGUUUGU................................................. len:22 al:3
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......................UACUUCAAUGUUAUCGGUUUuU................................................. len:22 al:3
......................UgCUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:2
......................UACUUCAAUGUUAUCGaUUUG.................................................. len:21 al:28
......................UACUUCAAUGUUAUCGGUUUGaU................................................ len:23 al:3
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......................UACUUCgAUGUUAUCGGUUUG.................................................. len:21 al:1
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......................UgCUUCAAUGUUAUCGGUUUGU................................................. len:22 al:38
......................UACUUCAAUaUUAUCGGUUUGU................................................. len:22 al:4
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......................UACUUCAAUGUUAUCGGUUUGa................................................. len:22 al:378
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......................UACUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:490
......................UACUUCAAUGUUAUCGu...................................................... len:17 al:1
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......................UACUUCAAUGUUAUCGGUUUGc................................................. len:22 al:1954
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......................UACUUCAAUGUUAUCGGUUUGg................................................. len:22 al:559
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.......................ACUUCAAUGUUAUCGGUUUGUU................................................ len:22 al:1
.......................ACUUCAAUGUUAUCGGUUUGa................................................. len:21 al:3
.......................ACUUCAAUGUUAUCGGUUUGc................................................. len:21 al:1
.......................ACUUCAAUGUUAUCGGUUUGUc................................................ len:22 al:2
.......................ACUUCAAUGUUAUCGGUUUaU................................................. len:21 al:1
.......................ACUUCAAUGUUAUCGGUUUGU................................................. len:21 al:6
........................CUUCAAUGUUAUCGGUUUGUUa............................................... len:22 al:1
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.........................UUCAAUGUUAUCGGUUUGUc................................................ len:20 al:6
.........................UUCAAUGUUAUCGGUUUGUU................................................ len:20 al:36
.........................UUCgAUGUUAUCGGUUUGUU................................................ len:20 al:1
.........................UUCAAUGUUAUCGGUUUGU................................................. len:19 al:86
.........................UUCAAUGUUAUCGGUUUGUa................................................ len:20 al:4
.........................UUCAAUGUUAUCGGUUUGUUa............................................... len:21 al:1
.........................UUCAAUGUUAUCGGUUUGg................................................. len:19 al:6
.........................UUCAAUGUUAUCGGUUUGcU................................................ len:20 al:1
.........................UUCAAUGUUAUCGGUUUGgU................................................ len:20 al:3
.........................UUCAAUGUUAUCGGUUUaU................................................. len:19 al:1
.........................UUCAAUGUUAUCGGUUUG.................................................. len:18 al:1
.........................UUCAAUGUUAUCGGUUUGa................................................. len:19 al:5
.........................UUCAAUGUUAUCGGUUUGUaU............................................... len:21 al:2
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...................................................GAACCGAUAACAUUGAAGUUAA.................... len:22 al:2
...................................................GAACCGAUAACAUUGAAGa....................... len:19 al:1
...................................................GAgCCGAUAACAUUGAAGUUA..................... len:21 al:1
...................................................GAACCGAUAACAUUGAAGUUAAAu.................. len:24 al:1
...................................................GAACCGAUAACAUUGAcG........................ len:18 al:1
...................................................GAACCGAUAACAUUGA.......................... len:16 al:19
...................................................GAACCGAUAACAUUGAAGc....................... len:19 al:2
...................................................GAACCGAUAACAUUGAAGU....................... len:19 al:3
...................................................GAACCGAUAACAUUGAAu........................ len:18 al:2
...................................................GAACCGAUAACAUUGAAGUUA..................... len:21 al:7
...................................................GAACCGAUAACAUUGAA......................... len:17 al:12
...................................................GAACCGAUAcCAUUGA.......................... len:16 al:3
...................................................GAACCGAUAACAUUGAAGUU...................... len:20 al:2
...................................................GAACCGAUAACAUUGAAGaU...................... len:20 al:1
...................................................GgACCGAUAACAUUGA.......................... len:16 al:1
...................................................GAACCGAUAACAUUG........................... len:15 al:1
...................................................GAACCGAUAACAUUGAAc........................ len:18 al:2