Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000009:3894902-3894992 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3258.ps
Locus Name: Cluster_3258
ACAAAGCCGGUUUGACCGAAUAGCAUAACAUUGUAAGAGAUCUUUAAGAGCUCUUGCAUUGUUGUGCUGUUCGGGAAAGCUUAAUCAACAG
........(((((..(((((((((((((((.((((((((.(((...))).)))))))).)))))))))))))))..))))).......... (-43.00)
....................UAGCAUAACuUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUCa................................................ len:23 al:26
....................UAGCAUAACAUUGUAAGAGAgC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGgGAUC................................................. len:22 al:2
....................UAGCAUAACAUUGUAAGAGAUCU................................................ len:23 al:18
....................UAGCAUAACAUUGUA........................................................ len:15 al:1
....................UAGCAUAACAUUGUAAGAaAUC................................................. len:22 al:2
....................UAGCAUAACAUUGUAcG...................................................... len:17 al:6
....................UAGCAUAACAUUGUAAGAGAUa................................................. len:22 al:11
....................UAGCAUAACAUUGUAAGAGAUC................................................. len:22 al:322
....................UAGCAUAACAUUGUAAGAGAUCUUUAu............................................ len:27 al:2
....................UAGCAUAACAUUGUAAa...................................................... len:17 al:5
....................UAGCAUAACAUUGUAAc...................................................... len:17 al:3
....................UAaCAUAACAUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGA................................................... len:20 al:4
....................UAGCAUAACAUUGUAAG...................................................... len:17 al:50
....................UgGCAUAACAUUGUAAG...................................................... len:17 al:1
....................UAGCAUAACAUUGUAAGAGgUC................................................. len:22 al:4
....................UAGCAUAACAUUGUAcGAGAUCU................................................ len:23 al:1
....................UAGCAUAACAUUGUAgGAGAUC................................................. len:22 al:2
....................UAGCAcAACAUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUCUc............................................... len:24 al:2
....................UAGCAUAuCAUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUu................................................. len:22 al:8
....................UAGCAUAACAUUGaAAGAGAUC................................................. len:22 al:1
....................cAGCAUAACAUUGUAAGAGAUC................................................. len:22 al:3
....................UAGCAUAACAUUGUAAGAGAU.................................................. len:21 al:3
....................UAGCAUAACAUUGUAAGAGAaC................................................. len:22 al:6
....................UAGCAUAACAUcGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUCc................................................ len:23 al:2
....................UAGCAUAACAUUGUAAGAGAcC................................................. len:22 al:1
....................aAGCAUAACAUUGUAAGAGAUC................................................. len:22 al:4
....................UgGCAUAACAUUGUAAGAGAUC................................................. len:22 al:2
....................UAGCAUAACAUUGUAAGAa.................................................... len:19 al:1
....................UAGCAUAACAUUGUAAGAuAUC................................................. len:22 al:1
....................UAuCAUAACAUUGUAAGAGAUC................................................. len:22 al:1
....................UAGCAUAACAUUGUAAGAGAUCg................................................ len:23 al:6
.......................................AUCUUUAuGAGCUCUUGC.................................. len:18 al:1
........................................UCUUUAuGAGCUCUUGCAUUGUUGUGCUGUU.................... len:31 al:1
.........................................CUUUAuGAGCUCUUGCAU................................ len:18 al:1
..........................................UUUAuGAGCUCUUGCAUUGUUGUGCUGUU.................... len:29 al:3
..............................................uGAGCUCUUGCAUUGUUGUGCUGUU.................... len:25 al:1
.................................................GCUCUUGCAUUGUUGUGCUGUc.................... len:22 al:23
.................................................GCUCUUcCAUUGUUGUGCUGUU.................... len:22 al:1
.................................................aCUCUUGCAUUGUUGUGCUGUU.................... len:22 al:3
.................................................GCUCUUGCAUUGUUGUGCUGUUa................... len:23 al:1
.................................................GCUCUUGCAUUGUUGUGCUGgU.................... len:22 al:4
.................................................GCUCUUGCAUUGUUGUGCUG...................... len:20 al:1
.................................................uCUCUUGCAUUGUUGUGCUGUU.................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGUU.................... len:22 al:80
.................................................GCUCUUGCAUUGUUGUGCUGcU.................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGU..................... len:21 al:3
.................................................GCUCUUGCAUUGUUGUGCUGaU.................... len:22 al:1
.................................................GaUCUUGCAUUGUUGUGCUGUU.................... len:22 al:1
.................................................GCUCUUGCAUUGUUuUGCUGUU.................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUaCUGUU.................... len:22 al:1
.................................................GCUCUUGCAUUGUUGUGCUGUa.................... len:22 al:7