Genome: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:5387738-5387830 minus
Post-script file name: /home/shared/8TB_HDD_01/sam/gitrepos/deep-dive/F-Pmea/output/13.1-Pmea-sRNAseq-ShortStack-R1-reads/ShortStack_out/strucVis/Cluster_3115.ps
Locus Name: Cluster_3115
UAUUGCUCAUUCAAAUGCUCGCUGGAAUUGUACAGAAGAUGAUUUAAUCAACUUUUCUACAAUUCCAGUGGAUAUUUGUUUCAGAAACAUUUA
.....((.(..((((((.((((((((((((((.(((((.((((...)))).))))).)))))))))))))).))))))..).))......... (-30.90)
.............AAUGCUCaCUGGAAUUGUAC............................................................ len:20 al:1
.................CUCGCUGGAAUUGUACAGAAGAUG.................................................... len:24 al:1
.................CUCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:27 al:1
..................UCGCUGGAAUUGUACAGAAGAUGAUUUc............................................... len:28 al:1
..................UCGCUGGgAUUGUACAGAAGAUGA................................................... len:24 al:1
..................cCGCUGGAAUUGUACAGAAG....................................................... len:20 al:1
..................UCGCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:8
..................UCGCUGGAAUUGUACAGu......................................................... len:18 al:1
..................UCGCUGGAAUUGUACAGAAGA...................................................... len:21 al:1
..................UCaCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:7
..................UCGCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:7
..................UCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:26 al:2
..................UCaCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:18
..................UCGCUGGAAUUGUACAGAAGAUGc................................................... len:24 al:1
..................UCGCUGGAAUUGUACAGAAGAUGu................................................... len:24 al:2
..................UCGCUGGAAUUGUACAGAAGAgG.................................................... len:23 al:5
..................UCGCUGGAAUUGUACAGAAGAUa.................................................... len:23 al:1
..................UCaCUGGAAUUGUACAGA......................................................... len:18 al:3
..................UCGCUGGAAUUGUACAGA......................................................... len:18 al:4
..................UCaCUGGAAUUGUACAGAAGAUGAU.................................................. len:25 al:1
..................UCGCUGGAAUUGUACAGAAGAU..................................................... len:22 al:1
..................UCGCUGGAAUUGUACAGAAGAUuA................................................... len:24 al:1
...................CGCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:7
...................CGCUGGAAUUGUACAGAAGAUGc................................................... len:23 al:1
...................CaCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:7
...................CGCUGGgAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAAUUGUACAGgAGAUGA................................................... len:23 al:1
...................CGCUGcAAUUGUACAGAAGAUG.................................................... len:22 al:1
...................CGCUaGAAUUGUACAGAAGAUGA................................................... len:23 al:2
...................CGCUGGAAUUGUACAGAAGAaG.................................................... len:22 al:1
...................CcCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAAUUGUACAGAAGAUu.................................................... len:22 al:2
...................CaCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:38
...................CGCUGGAAUUGUACAGAAGAUGAc.................................................. len:24 al:1
...................CGCUGGAAUUGUACAGAAGAUa.................................................... len:22 al:5
...................CaCUGGAAUUGUACAGAAGAU..................................................... len:21 al:1
...................CGCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:20
...................CGCUGGAAUUGUACAGA......................................................... len:17 al:4
...................CGCUGGAAUUGUACAGAgGAUGAU.................................................. len:24 al:1
...................CGCUGGAAUUGUACAGAAGAUGg................................................... len:23 al:6
...................CaCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:2
...................CGCUGGAAUUGUACAGAAGAUGAUa................................................. len:25 al:11
...................CGCUGGAgUUGUACAGAAGAUGA................................................... len:23 al:1
...................uGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAAUUGUACAGAAGAUGAa.................................................. len:24 al:1
...................CGCUGGAAUUGUACAGAAGAgG.................................................... len:22 al:1
...................CaCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:3
...................CGCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:1
...................CGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:135
...................CGCUGGAAUUGUACAGAAGAUGu................................................... len:23 al:3
...................CGCUGGAAUUGUACAGAAGAUGAgU................................................. len:25 al:2
...................CGCUGGAAUUGUACAGAAGAUaA................................................... len:23 al:3
....................GCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:42
....................GCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:1
....................aCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:2
....................GCUGGAAUUGUACAGAAGAUGAUUUu............................................... len:26 al:1
....................GCUGGAAUUGUACAGAAGAcGA................................................... len:22 al:1
....................GCUGaAAUUGUACAGAAGAUGA................................................... len:22 al:1
....................aCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:53
....................GCUGGAAUUGUACAGAAGAUGc................................................... len:22 al:1
....................GCUGGAAUUGUACAGAAGAUGu................................................... len:22 al:5
......................UGGAAUUGUACAGAAGAUGAU.................................................. len:21 al:1
......................UGGAAUUGUACAGAAGAUGg................................................... len:20 al:2
......................UGGAAUUGUACAGAAGAgG.................................................... len:19 al:1
......................UGGAgUUGUACAGAAGAUGA................................................... len:20 al:1
......................UGGAAUUGUACAGAAGAUG.................................................... len:19 al:3
......................UGGAAUUGUACAGAAG....................................................... len:16 al:1
......................UGGAAUUGUACAGAAGAUGA................................................... len:20 al:20
................................................CAACUUUUCUACAAUUCCAGUGGA..................... len:24 al:3
................................................CAACUUUUCUACAAUUCCAGa........................ len:21 al:3
................................................CAACUUUUCUACAAUUCCAGU........................ len:21 al:2
................................................CAACUUUUCUACAAUUCCAGUG....................... len:22 al:1
.................................................AACUUUUCcACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUG....................... len:21 al:70
.................................................AACUUUUCUACAAUUCCAGUGc...................... len:22 al:11
.................................................AACUUUUCUACAAUUCCAGUGGAUA................... len:25 al:5
.................................................AgCUUUUCUACAAUUCCAGUGG...................... len:22 al:1
.................................................AACUUUUCUgCAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUcUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUa....................... len:21 al:19
.................................................AACcUUUCUACAAUUCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGUGGAUu................... len:25 al:10
.................................................AACUgUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGgGG...................... len:22 al:7
.................................................AACUUUUCUACAAUUCCAGUaG...................... len:22 al:2
.................................................AACUUUUCUACAAUUCCAGcGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUGu...................... len:22 al:19
.................................................AgCUUUUCUACAAUUCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUuCAGU........................ len:20 al:2
.................................................AACUUUUCUACAAUUCCAGUGG...................... len:22 al:135
.................................................AACUUUUCUACAgUUCCAGUG....................... len:21 al:1
.................................................AACUUUUCUACAAUUCCAGUGGA..................... len:23 al:265
.................................................AAuUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCC........................... len:17 al:36
.................................................AACUUUUCUACAAUUCCAGUGGg..................... len:23 al:21
.................................................AACUUUUCUACAAUUCCAGa........................ len:20 al:2
.................................................AACUUUUCUACAAUcCCAGUGGA..................... len:23 al:3
.................................................AACUUUUCcACAAUUCCAGU........................ len:20 al:1
.................................................gACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUaCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACcUUUCUACAAUUCCAGUG....................... len:21 al:1
.................................................AACUUUUCUACAAUUCu........................... len:17 al:2
.................................................AACUUUUCUACAAUUCCAGgG....................... len:21 al:17
.................................................AACUUgUCUACAAUUCCAGUGG...................... len:22 al:1
.................................................AACUUUUCUACAAUUCCAaU........................ len:20 al:5
.................................................AACUUUUCUACAAUUCCuGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGUGcA..................... len:23 al:1
.................................................AACUUUUCUACAAUcCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGc........................ len:20 al:36
.................................................AACUUUUCUACAAUUCCAcU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGUGGc..................... len:23 al:29
.................................................AgCUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUGGu..................... len:23 al:96
.................................................AACcUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAG......................... len:19 al:2
.................................................cACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGcG....................... len:21 al:3
.................................................AACUUUUCUACAAUUCa........................... len:17 al:2
.................................................AACUUUUCUACAAUUCCAGg........................ len:20 al:3
.................................................AACUUUUCUACAAUUCCAGUGGuUA................... len:25 al:1
.................................................gACUUUUCUACAAUUCCAGUGG...................... len:22 al:2
.................................................AACUUUUCUACAAUUCCAGUGa...................... len:22 al:58
.................................................AAuUUUUCUACAAUUCCAGUGG...................... len:22 al:1
.................................................AACUUUUCUACAAUUCCAGU........................ len:20 al:136
.................................................AACUUUUCUACAAUUCCgGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUcG...................... len:22 al:3
.................................................AACUUUUCUACAAUUCCgGU........................ len:20 al:1
.................................................AuCUUUUCUACAAUUCCAGUG....................... len:21 al:1
.................................................AACUUUUCaACAAUUCC........................... len:17 al:1
.................................................AACUUUUCUACAAUUCCAGaG....................... len:21 al:2
..................................................ACUUUUCUACAAUUCCAGU........................ len:19 al:1
...................................................CUUUUCUACAAUUCCAGUGGAUu................... len:23 al:1
...................................................CUUUUCUACAAUUCCAGUGG...................... len:20 al:1